genome-wide identification of hrpl-regulated genes in the necrotrophic phytopathogen dickeya dadantii 3937全基因组鉴定necrotrophic hrpl-regulated基因的植物病原体dickeya dadantii 3937.pdfVIP
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genome-wide identification of hrpl-regulated genes in the necrotrophic phytopathogen dickeya dadantii 3937全基因组鉴定necrotrophic hrpl-regulated基因的植物病原体dickeya dadantii 3937
Genome-Wide Identification of HrpL-Regulated Genes in
the Necrotrophic Phytopathogen Dickeya dadantii 3937
1¤a 1 1¤b 1 1,2 3
Shihui Yang , Quan Peng , Qiu Zhang , Lifang Zou , Yan Li , Christelle Robert , Leighton
3 3 1 2 3 3 1
Pritchard , Hui Liu , Raymond Hovey , Qi Wang , Paul Birch , Ian K. Toth *, Ching-Hong Yang *
1 Department of Biological Sciences, University of Wisconsin, Milwaukee, Wisconsin, United States of America, 2 Department of Plant Pathology, China Agricultural
University, Beijing, China, 3 Plant Pathology, Scottish Crop Research Institute, Invergowrie, Dundee, United Kingdom
Abstract
Background: Dickeya dadantii is a necrotrophic pathogen causing disease in many plants. Previous studies have
demonstrated that the type III secretion system (T3SS) of D. dadantii is required for full virulence. HrpL is an alternative
sigma factor that binds to the hrp box promoter sequence of T3SS genes to up-regulate their expression.
Methodology/Principal Findings: To explore the inventory of HrpL-regulated genes of D. dadantii 3937 (3937),
transcriptome profiles of wild-type 3937 and a hrpL mutant grown in a T3SS-inducing medium were examined. Using a cut-
off value of 1.5, significant differential expression was observed in sixty-three genes, which are involved in various cellular
functions such as type III secretion, chemotaxis, metabolism, regulation, and stress response. A hidden Markov model
(HMM) was used to predict candidate hrp box binding sites in the interge
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