［ＩＴ资料文档］user_manual.pdfVIP

BLAST Command Line Applications User Manual B L Christiam Camacho A S NCBI T camacho@ H e Thomas Madden l p NCBI madden@ George Coulouris NCBI coulouri@ B Vahram Avagyan L NCBI A S avagyanv@ T H Ning Ma e NCBI l p maning@ Tao Tao NCBI tao@ Richa Agarwala B NCBI L richa@ A S T H e 1. Introduction l p This manual documents the BLAST (Basic Local Alignment Search Tool) command line applications developed at the National Center for Biotechnology Information (NCBI). These applications have been revamped to provide an improved user interface, new features, and performance improvements compared to its counterparts in the NCBI C Toolkit. Hereafter we shall distinguish the C Toolkit BLAST command line applications from these command line applications by referring to the latter as the BLAST+ applications, which have been developed B using the NCBI C++ Toolkit (/books/bv.fcgi? L A rid=toolkit.TOCdepth=2). S T Please feel free to contact us with any questions, feedback, or bug reports at blast- H help@. e l p 2. Installation The BLAST+ applications are distributed in executable and source code format. For the executable formats we provide installers as well as tarballs; the source code is only provided as a tarball. These are freely available at /blast/executables/blast+/.