BrainNetViewerManual.docVIP

Contents 1 Introduction 3 2 Installation 4 2.1 Run BrainNet Viewer on a PC with Matlab 4 2.2 Run BrainNet Viewer on a PC without Matlab 4 3 Pictures 6 4 Load Files 8 4.1 Load a surface file 8 4.2 Load a node file 10 4.3 Load an edge file 11 4.4 Load a volume file 13 5 Visualize option 14 5.1 Layout panel 14 5.2 Global panel 16 5.3 Surface panel 17 5.4 Node panel 18 5.5 Edge panel 20 5.6 Volume panel 23 5.7 Image panel 26 6 Menu 28 6.1 Files 28 6.2 Option 29 6.3 Visualize 29 6.4 Tools 29 6.5 Help 30 7 Toolbar 31 7.1 Load Files Save as Image 31 7.2 Print Zoom 31 7.3 Move, Rotate Get position 32 7.4 Standard view 32 7.5 Demo 33 8 Command line 34 References 37 Introduction Please cite as ‘... was/were visualized with the BrainNet Viewer (Xia et al., 2013, /projects/bnv/)’ while using the package to make publicized pictures. Reference: Xia M, Wang J, He Y (2013) BrainNet Viewer: A Network Visualization Tool for Human Brain Connectomics. PLoS ONE 8: e68910. BrainNet Viewer is a brain network visualization tool, which can help researchers to visualize structural and functional connectivity patterns from different levels in a quick, easy and flexible way. It would be greatly appreciated if you have any suggestions about the package or manual. BrainNet Viewer is developed using MATLAB (The MathWorks Inc., Natick, MA, US) as a programming language, with a user-friendly GUI, under a 64-bit Windows (Microsoft Corp., Redmond, WA, US) environment. The toolbox includes functions of Statistical Parametric Mapping 8 (SPM, http://www.fil.ion.ucl.ac.uk/spm/) for loading NIfTI and Analyze format files (*.nii; *.img). This toolbox has been successfully tested under a variety of operating systems with MATLAB installed, including Windows (XP, 7, 8 and Server versions), Linux (Ubuntu and CentOS) and Mac OS in both 32- and 64-bit versions. Developed by Mingrui Xia, National Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, China Contact info