Introduction to BLAST.pptVIP

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Changing E, T matrix for blastp nr RBP Expect 10 (T=11) 1 (T=11) 10,000 (T=11) 10 (T=5) 10 (T=11) 10 (T=16) 10 (BL45) 10 (PAM70) #hits to db 129m 129m 129m 112m 112m 112m 386m 129m #sequences 1,043,455 1.0m 1.0m 907,000 907,000 907,000 1.0m 1.0m #extensions 5.2m 5.2m 5.2m 508m 4.5m 73,788 30.2m 19.5m #successful extensions 8,367 8,367 8,367 11,484 7,288 1,147 9,088 13,873 #sequences better than E 142 86 6,439 125 124 88 110 82 #HSPsE (no gapping) 53 46 6,099 48 48 48 60 66 #HSPs gapped 145 88 6,609 127 126 90 113