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Coevolving Solutions to the Shortest Common Superstring共同进化的解决最短常见的超弦理论.ppt

Coevolving Solutions to the Shortest Common Superstring共同进化的解决最短常见的超弦理论.ppt

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Coevolving Solutions to the Shortest Common Superstring Problem Assaf Zaritsky Moshe Sipper Ben-Gurion University, Israel www.cs.bgu.ac.il/~assafza Outline The Shortest Common Superstring Problem (SCS) SCS: Example Approximation Algorithms Outline DNA Sequencing DNA Sequencing (cont’d) The Input Domain Input Generation Setup: Parameters Outline Simple Genetic Algorithm Simple GA for the SCS Problem Simple GA for the SCS Problem (cont’d) Simple GA for the SCS Problem (cont’d) Simple GA for the SCS Problem (example) Coevolution Cooperative Coevolution Cooperative Coevolution (cont’d) Cooperative Coevolution (cont’d) Cooperative Coevolutionary Algorithm for the SCS Problem Cooperative Coevolutionary Algorithm for the SCS Problem (evaluation process) Cooperative Coevolutionary Algorithm for the SCS Problem (evaluation process) Experiments Experimental Setup Results: Experiment I (~50 blocks) Results: Experiment II (~80 blocks) Results: Summary Conclusion: Outline The Puzzle Algorithm The Schema Theorem Building Blocks Hypothesis Our Interpretation The Main Assumption A Problem Example Example (con’t) Puzzle Algorithm: The Idea Puzzle Algorithm (cont’d) Puzzle Algorithm (cont’d) Puzzle Algorithm: Zoom In Puzzle Algorithm: Zoom In The Candidate Solutions Population The Building Blocks Population The Building Blocks Population (con’t) Building Blocks – Candidate Solutions Building Blocks – Candidate Solutions Update Recombination-aid vector Update Recombination-aid vector Update Recombination-aid vector Recombination-loci selection Experiments Building Blocks - Experimental Setup Results: Experiment III (~50 blocks) Results: Experiment IV (~80 blocks) Results: Summary Relations Between The Algorithms The Co-Puzzle Algorithm Experiments Results: Experiment V (~80 blocks) Results: Experiment VI (~50 blocks) Results: Summary Outline Results: Summary Larger Problems - Using More Species Conclusions Conclusions (con’t) Future Work Outline The Messy Puzzle Algorithm Sta

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