A Differentiation-Based Phylogeny of Cancer Subtypes 英文参考文献.docVIP

A Differentiation-Based Phylogeny of Cancer Subtypes 英文参考文献.doc

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A Differentiation-Based Phylogeny of Cancer Subtypes 英文参考文献

ADifferentiation-BasedPhylogenyofCancerSubtypes MarkusRiester1,2.,CamilleStephan-OttoAttolini1.,RobertJ.Downey3,SamuelSinger3 ,Franziska Michor1* 1ComputationalBiologyCenter,MemorialSloan-KetteringCancerCenter,NewYork,NewYork,UnitedStatesofAmerica,2DepartmentofBioinformatics,Universityof Leipzig,Leipzig,Germany,3DepartmentofSurgery,MemorialSloan-KetteringCancerCenter,NewYork,NewYork,UnitedStatesofAmerica Abstract Histopathologicalclassificationofhumantumorsreliesinpartonthedegreeofdifferentiationofthetumorsample.Todate, thereisnoobjectivesystematicmethodtocategorizetumorsubtypesbymaturation.Inthispaper,weintroduceanovel computationalalgorithmtoranktumorsubtypesaccordingtothedissimilarityoftheirgeneexpressionfromthatofstem cellsandfullydifferentiatedtissue,andtherebyconstructaphylogenetictreeofcancer.Wevalidateourmethodologywith expressiondataofleukemia,breastcancerandliposarcomasubtypesandthenapplyittoabroadergroupofsarcomas.This rankingoftumorsubtypesresultingfromtheapplicationofourmethodologyallowstheidentificationofgenescorrelated withdifferentiationandmayhelptoidentifynoveltherapeutictargets.Ouralgorithmrepresentsthefirstphylogeny-based tooltoanalyzethedifferentiationstatusofhumantumors. Citation:RiesterM,Stephan-OttoAttoliniC,DowneyRJ,SingerS,MichorF(2010)ADifferentiation-BasedPhylogenyofCancerSubtypes.PLoSComputBiol6(5): e1000777.doi:10.1371/journal.pcbi.1000777 Editor:WilliamStaffordNoble,UniversityofWashington,UnitedStatesofAmerica ReceivedFebruary17,2009;AcceptedApril2,2010;PublishedMay6,2010 Copyright: ? 2010 Riester et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricteduse,distribution,andreproductioninanymedium,providedtheoriginalauthorandsourcearecredited. Funding: This work was funded by the Soft Tissue Sarcoma Program Project (P01 CA047179) and The European Commission NEST Pathfinder Initiative on ComplexitythroughprojectEDEN(Contract043251).Thefundershadnoroleinstudy

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