原创力文档differential selection on carotenoid biosynthesis genes as a function of gene position in the metabolic pathway a study on the carrot and dicots微分选择类胡萝卜素生物合成基因代谢途径的基因位置的函数研究胡萝卜和双子叶植物.pdfVIP
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differential selection on carotenoid biosynthesis genes as a function of gene position in the metabolic pathway a study on the carrot and dicots微分选择类胡萝卜素生物合成基因代谢途径的基因位置的函数研究胡萝卜和双子叶植物
Differential Selection on Carotenoid Biosynthesis Genes
as a Function of Gene Position in the Metabolic Pathway:
A Study on the Carrot and Dicots
´ ´ 1,2,3 1,2,3 1,2,3 1,2,3
Jeremy Clotault *, Didier Peltier , Vanessa Soufflet-Freslon , Mathilde Briard ,
Emmanuel Geoffriau1,2,3
´
1 Universite d’Angers, UMR1345 Institut de Recherche en Horticulture et Semences, PRES L’UNAM, Angers, France, 2 Agrocampus Ouest, UMR1345 Institut de Recherche
´
en Horticulture et Semences, Angers, France, 3 INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Abstract
Background: Selection of genes involved in metabolic pathways could target them differently depending on the position of
genes in the pathway and on their role in controlling metabolic fluxes. This hypothesis was tested in the carotenoid
biosynthesis pathway using population genetics and phylogenetics.
Methodology/Principal Findings: Evolutionary rates of seven genes distributed along the carotenoid biosynthesis pathway,
IPI, PDS, CRTISO, LCYB, LCYE, CHXE and ZEP, were compared in seven dicot taxa. A survey of deviations from neutrality
expectations at these genes was also undertaken in cultivated carrot (Daucus carota subsp. sativus), a species that has been
intensely bred for carotenoid pattern diversification in its root during its cultivation history. Parts of sequences of these
genes were obtained from 46 individuals representing a wide diversity of cultivated carrots. Downstream
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