a gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers干细胞pluripotentiality和分化的基因表达谱在不同固体和造血癌症是守恒的.pdfVIP

Palmer et al. Genome Biology 2012, 13:R71 /2012/13/8/R71 RESEARCH Open Access A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers Nathan P Palmer1†, Patrick R Schmid1†, Bonnie Berger1,2* and Isaac S Kohane3* Abstract Background: Understanding the fundamental mechanisms of tumorigenesis remains one of the most pressing problems in modern biology. To this end, stem-like cells with tumor-initiating potential have become a central focus in cancer research. While the cancer stem cell hypothesis presents a compelling model of self-renewal and partial differentiation, the relationship between tumor cells and normal stem cells remains unclear. Results: We identify, in an unbiased fashion, mRNA transcription patterns associated with pluripotent stem cells. Using this profile, we derive a quantitative measure of stem cell-like gene expression activity. We show how this 189 gene signature stratifies a variety of stem cell, malignant and normal tissue samples by their relative plasticity and state of differentiation within Concordia, a diverse gene expression database consisting of 3,209 Affymetrix HGU133+ 2.0 microarray assays. Further, the orthologous murine signature correctly orders a time course of differentiating embryonic mouse stem cells. Finally, we demonstrate how this stem-like signature serves as a proxy for tumor grade in a variety of solid tumors, including brain, breast, lung and colon. Conclusions: This core stemness gene expression signature represents a quantitative measure of stem cell- associated transcriptional activity. Broadly, the intensity of this signature correlates to the relative level of plasticity and differentiation across all of the human tissues analyzed. The fact that the intensity of this signatur