A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs 英文参考文献.docVIP
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A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs 英文参考文献
AGenome-WideGeneExpressionSignatureof
EnvironmentalGeographyinLeukocytesofMoroccan
Amazighs
YoussefIdaghdour1,JohnD.Storey2,SamiJ.Jadallah3,GregGibson1,4*
1NorthCarolinaStateUniversity,Raleigh,NorthCarolina,UnitedStatesofAmerica,2PrincetonUniversity,Princeton,NewJersey,UnitedStatesofAmerica,3HRHPrince
SultanInternationalFoundationforConservationandDevelopmentofWildlife,Agadir,Morocco,4UniversityofQueensland,Brisbane,Queensland,Australia
Abstract
Thedifferentenvironmentsthathumansexperiencearelikelytoimpactphysiologyanddiseasesusceptibility.Inorderto
estimatethemagnitudeoftheimpactofenvironmentontranscriptabundance,weexaminedgeneexpressioninperipheral
blood leukocyte samples from 46 desert nomadic, mountain agrarian and coastal urban Moroccan Amazigh individuals.
Despitegreatexpressionheterogeneityinhumans,asmuchasonethirdoftheleukocytetranscriptomewasfoundtobe
associatedwithdifferencesamongregions.Genome-widepolymorphismanalysisindicatesthatgeneticdifferentiationin
the total sample is limited and is unlikely to explain the expression divergence. Methylation profiling of 1,505 CpG sites
suggests limited contribution of methylation to the observed differences in gene expression. Genetic network analysis
further implies that specific aspects of immune function are strongly affected by regional factors and may influence
susceptibilitytorespiratoryandinflammatorydisease.Ourresultsshowastronggenome-widegeneexpressionsignatureof
regional population differences that presumably include lifestyle, geography, and biotic factors, implying that these can
playatleastasgreataroleasgeneticdivergenceinmodulatinggeneexpressionvariationinhumans.
Citation: Idaghdour Y, Storey JD, Jadallah SJ, Gibson G (2008) A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of
MoroccanAmazighs.PLoSGenet4(4):e1000052.doi:10.1371/journal.pgen.1000052
Editor:GregBarsh,StanfordUniversitySchoolofMedicine,UnitedStatesofAmerica
ReceivedDecember11,2007;AcceptedMarch14,2008;Publ
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