A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs 英文参考文献.docVIP

A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs 英文参考文献.doc

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A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs 英文参考文献

AGenome-WideGeneExpressionSignatureof EnvironmentalGeographyinLeukocytesofMoroccan Amazighs YoussefIdaghdour1,JohnD.Storey2,SamiJ.Jadallah3,GregGibson1,4* 1NorthCarolinaStateUniversity,Raleigh,NorthCarolina,UnitedStatesofAmerica,2PrincetonUniversity,Princeton,NewJersey,UnitedStatesofAmerica,3HRHPrince SultanInternationalFoundationforConservationandDevelopmentofWildlife,Agadir,Morocco,4UniversityofQueensland,Brisbane,Queensland,Australia Abstract Thedifferentenvironmentsthathumansexperiencearelikelytoimpactphysiologyanddiseasesusceptibility.Inorderto estimatethemagnitudeoftheimpactofenvironmentontranscriptabundance,weexaminedgeneexpressioninperipheral blood leukocyte samples from 46 desert nomadic, mountain agrarian and coastal urban Moroccan Amazigh individuals. Despitegreatexpressionheterogeneityinhumans,asmuchasonethirdoftheleukocytetranscriptomewasfoundtobe associatedwithdifferencesamongregions.Genome-widepolymorphismanalysisindicatesthatgeneticdifferentiationin the total sample is limited and is unlikely to explain the expression divergence. Methylation profiling of 1,505 CpG sites suggests limited contribution of methylation to the observed differences in gene expression. Genetic network analysis further implies that specific aspects of immune function are strongly affected by regional factors and may influence susceptibilitytorespiratoryandinflammatorydisease.Ourresultsshowastronggenome-widegeneexpressionsignatureof regional population differences that presumably include lifestyle, geography, and biotic factors, implying that these can playatleastasgreataroleasgeneticdivergenceinmodulatinggeneexpressionvariationinhumans. Citation: Idaghdour Y, Storey JD, Jadallah SJ, Gibson G (2008) A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of MoroccanAmazighs.PLoSGenet4(4):e1000052.doi:10.1371/journal.pgen.1000052 Editor:GregBarsh,StanfordUniversitySchoolofMedicine,UnitedStatesofAmerica ReceivedDecember11,2007;AcceptedMarch14,2008;Publ

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