OptimizationandaDoubleStatisticalFilterforProteinThre.docVIP

Linear Programming Optimization and a Double Statistical Filter for Protein Threading Protocols. Jaroslaw Meller1,2 and Ron Elber1* 1Department of Computer Science Upson Hall 4130 Cornell University Ithaca NY 14853 2Department of Computer Methods, Nicholas Copernicus University, 87-100 Torun, Poland * Corresponding author Phone (607)255-7416 Fax (607)255-4428 e-mail ron@ Running title: “LP based threading model” Keywords: Linear Programming, Potential Optimization, decoy structures, threading, gaps Abstract The design of scoring functions (or potentials) for threading, differentiati