Differential Expression of miRNAs in Response to Topping in Flue-Cured Tobacco (Nicotiana tabacum) Roots 英文参考文献.docVIP
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Differential Expression of miRNAs in Response to Topping in Flue-Cured Tobacco (Nicotiana tabacum) Roots 英文参考文献
DifferentialExpressionofmiRNAsinResponseto
ToppinginFlue-CuredTobacco(Nicotianatabacum)
Roots
HongxiangGuo1.,YunchaoKan2.,WeiqunLiu1*
1The Key Lab of National Tobacco Cultivation, College of Life Sciences, Henan Agricultural University, Zhengzhou, China, 2China-UK NYNU-RRes Joint Lab of Insect
Biology,NanyangNormalUniversity,Nanyang,China
Abstract
Background:Toppingisanimportantcultivatingmeasureforflue-curedtobacco,andmanygeneshadbeenfoundtobe
differentiallyexpressedinresponsetotopping.Butitisstillunclearhowthesegenesareregulated.MiRNAsplayacritical
role in post-transcriptional gene regulation, so we sequenced two sRNA libraries from tobacco roots before and after
topping,withaviewtoexploringtranscriptionaldifferencesinmiRNAs.
Methodology/PrincipalFindings:TwosRNAlibrariesweregeneratedfromtobaccorootsbeforeandaftertopping.Solexa
high-throughput sequencing of tobacco small RNAs revealed a total of 12,104,207 and 11,292,018 reads representing
3,633,398and3,084,102distinctsequencesbeforeandaftertopping.Theexpressionsof136conservedmiRNAs(belonging
to32families)and126newmiRNAs(belongingto77families)weredetermined.TherewerethreemajorconservedmiRNAs
families(nta-miR156,nta-miR172andnta-miR171)andtwomajornewmiRNAsfamilies(nta-miRn2andnta-miRn26).Allof
theseidentifiedmiRNAscanbefoldedintocharacteristicmiRNAstem-loopsecondaryhairpinstructures,andqRT-PCRwas
adoptedtovalidateandmeasuretheexpressionofmiRNAs.Putativetargetswereidentifiedfor133outof136conserved
miRNAsand126newmiRNAs.OfthesemiRNAswhosetargetshadbeenidentified,themiRNAswhichchangemarkedly(.2
folds)belongto53familiesandtheirtargetshavedifferentbiologicalfunctionsincludingdevelopment,responsetostress,
responsetohormone,Nmetabolism,Cmetabolism,signaltransduction,nucleicacidmetabolismandothermetabolism.
SomeinterestingtargetsformiRNAshadbeendetermined.
Conclusions/Significance: The differential expression profiles of miRNAs were shown in flue-cured tobacco roots before
and after topping, which can be expected to regu
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