Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice 英文参考文献.docVIP

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Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice 英文参考文献.doc

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Mutational Bias and Translational Selection Shaping the Codon Usage Pattern of Tissue-Specific Genes in Rice 英文参考文献

MutationalBiasandTranslationalSelectionShapingthe CodonUsagePatternofTissue-SpecificGenesinRice QingpoLiu* CollegeofAgricultureandFoodScience,ZhejiangAFUniversity,Lin’an,People’sRepublicofChina Abstract Theregulatorymechanismsofdeterminingwhichgenesspecificallyexpressedinwhichtissuesarestillnotfullyelucidated, especiallyin plants.Usinginternal correspondence analysis,Ifirstestablish thattissue-specificgenesexhibitsignificantly different synonymous codon usage in rice, although this effect is weak. The variability of synonymous codon usage between tissues accounts for 5.62% of the total codon usage variability, which has mainly arisen from the neutral evolutionary forces, such as GC content variation among tissues. Moreover, tissue-specific genes are under differential selectiveconstraints,inferringthatnaturalselectionalsocontributestothecodonusagedivergencebetweentissues.These findingsmayaddfurtherevidenceinunderstandingthedifferentiationandregulationoftissue-specificgeneproductsin plants. Citation:LiuQ(2012)MutationalBiasandTranslationalSelectionShapingtheCodonUsagePatternofTissue-SpecificGenesinRice.PLoSONE7(10):e48295. doi:10.1371/journal.pone.0048295 Editor:MarcRobinson-Rechavi,UniversityofLausanne,Switzerland ReceivedJune25,2012;AcceptedSeptember24,2012;PublishedOctober29,2012 Copyright: ? 2012 Qingpo Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricteduse,distribution,andreproductioninanymedium,providedtheoriginalauthorandsourcearecredited. Funding:ThisworkwasfinanciallysupportedbygrantsfromtheNationalNaturalScienceFoundationofChina,ZhejiangProvincialNaturalScience FoundationofChina(Y3090152),andtheintramuralfundfromZhejiangAFUniversitytoQ.Liu(No.2010FR060).Thefundershadnoroleinstudydesign,data collectionandanalysis,decisiontopublish,orpreparationofthemanuscript. CompetingInterests:TheAuthorhasdeclaredthatnocompetinginterestsexist. *E-mail:liuqp@ Introduction under