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Mutual Information for Testing Gene-Environment Interaction 英文参考文献
MutualInformationforTestingGene-Environment
Interaction
XuesenWu1,4,LiJin1,2,MomiaoXiong1,3
*
1SchoolofLifeScience,TheoreticSystemsBiologyLaboratoryandCenterforEvolutionaryBiology,FudanUniversity,Shanghai,China, 2CAS-MPGPartnerInstituteof
ComputationalBiology,SIBS,CAS,Shanghai,China,3HumanGeneticsCenter,SchoolofPublicHealth,TheUniversityofTexasHealthScienceCenteratHouston,Houston,
Texas,UnitedStatesofAmerica,4DepartmentofEpidemiologyandStatistics,BengbuMedicalCollegeatBengbu,Anhui,China
Abstract
Despite currententhusiasm forinvestigation ofgene-gene interactions andgene-environmentinteractions, theessential
issue of how to define and detect gene-environment interactions remains unresolved. In this report, we define gene-
environmentinteractionsasastochasticdependenceinthecontextoftheeffectsofthegeneticandenvironmentalrisk
factors on the cause of phenotypic variation among individuals. We use mutual information that is widely used in
communication and complex system analysis to measure gene-environment interactions. We investigate how gene-
environment interactions generate the large difference in the information measure of gene-environment interactions
between the general population and a diseased population, which motives us to develop mutual information-based
statisticsfortestinggene-environmentinteractions.Wevalidatedthenulldistributionandcalculatedthetype1errorrates
forthemutualinformation-basedstatistics totestgene-environmentinteractions usingextensivesimulationstudies.We
foundthatthenewteststatisticsweremorepowerfulthanthetraditionallogisticregressionunderseveraldiseasemodels.
Finally,inordertofurtherevaluatetheperformanceofournewmethod,weappliedthemutualinformation-basedstatistics
tothreerealexamples.OurresultsshowedthatP-valuesforthemutualinformation-basedstatisticsweremuchsmallerthan
thatobtainedbyotherapproachesincludinglogisticregressionmodels.
Citation:WuX,JinL,XiongM(2009)MutualInformationforTestingGene-EnvironmentInteraction.PLoSONE4(2)
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