Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription.docVIP
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Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
Open Access
Re rch
2007NakayaetVoal.lumesea8, Issue 3, Article R43
Genome mapping and expression analyses of human intronic
noncoding RNAs reveal tissue-specific patterns and enrichment in
genes related to regulation of transcription
Helder I Nakaya, Paulo P Amaral, Rodrigo Louro, André Lopes,
Angela A Fachel, Yuri B Moreira, Tarik A El-Jundi, Aline M da Silva,
Eduardo M Reis and Sergio Verjovski-Almeida
Address: Departamento de Bioquimica, Instituto de Quimica, Universidade de S?o Paulo, 05508-900 S?o Paulo, SP, Brazil.
Correspondence: Sergio Verjovski-Almeida. Email: verjo@iq.usp.br
Published: 26 March 2007
Received: 17 October 2006
Revised: 17 January 2007
Accepted: 26 March 2007
Genome Biology 2007, 8:R43 (doi:10.1186/gb-2007-8-3-r43)
The electronic version of this article is the complete one and can be
found online at /2007/8/3/R43
? 2007 Nakaya et al.; licensee BioMed Central Ltd.
This is an open access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which
permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
ExpressionuspinAg nolagnoanlofyuscihumanlseooftitdheetotallyaerxrparyesshintronicsiaosnidoefn7t,noncoding1if3ie5dhduimvearnsRNAsetotallyintronintronicic RNA noncodingexpression RNApattertranscriptsns, pointinplusg to dtheisticorrespondingnct regulatory protein-codingroles./p
genes
Abstract
Background: RNAs transcribed from intronic regions of genes are involved in a number of
processes related to post-transcriptional control of gene expression. However, the complement
of human genes in which introns are transcribed, and the number of intronic transcriptional units
and their tissue expression patterns are not known.
Results: A survey of mRNA and EST public databases revealed more than 55,000 totally intronic
noncoding (TIN) RNAs transcribed from the introns of 74% of all unique RefSeq genes. Guided by
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