原创力文档a high-resolution map of arabidopsis recombinant inbred lines by whole-genome exon array hybridization高分辨率的地图拟南芥全基因组外显子阵列杂交重组自交系.pdfVIP
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a high-resolution map of arabidopsis recombinant inbred lines by whole-genome exon array hybridization高分辨率的地图拟南芥全基因组外显子阵列杂交重组自交系
A High-Resolution Map of Arabidopsis
Recombinant Inbred Lines by Whole-Genome
Exon Array Hybridization
Tatjana Singer1¤*, Yiping Fan1,2, Hur-Song Chang1,3, Tong Zhu1,4, Samuel P. Hazen1,5, Steven P. Briggs1,6
1 Torrey Mesa Research Institute, Syngenta Research and Technology, San Diego, California, United States of America, 2 St. Jude Children’s Research Hospital, Hartwell
Center for Bioinformatics and Biotechnology, Memphis, Tennessee, United States of America, 3 DermTech International, La Jolla, California, United States of America,
4 Syngenta Biotechnology, Research Triangle Park, North Carolina, United States of America, 5 The Scripps Research Institute, La Jolla, California, United States of America,
6 Division of Biological Sciences, University of California San Diego, La Jolla, California, United States of America
Recombinant populations were the basis for Mendel’s first genetic experiments and continue to be key to the study of
genes, heredity, and genetic variation today. Genotyping several hundred thousand loci in a single assay by
hybridizing genomic DNA to oligonucleotide arrays provides a powerful technique to improve precision linkage
mapping. The genotypes of two accessions of Arabidopsis were compared by using a 400,000 feature exon-specific
oligonucleotide array. Around 16,000 single feature polymorphisms (SFPs) were detected in ;8,000 of the ;26,000
genes represented on the array. Allelic variation at these loci was measured in a recombinant inbred line population,
which defined the location of 815 recombination breakpoints. The genetic linkage map had a total length of 422.5 cM,
with 676 informative SFP markers representing intervals of ;0.6 cM. One hundred fifteen single gene intervals were
identified. Recombination rate, SFP distribution, and segregation in this population are not unif
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