genetic and computational identification of a conserved bacterial metabolic module遗传和计算守恒的细菌代谢模块的识别.pdfVIP
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genetic and computational identification of a conserved bacterial metabolic module遗传和计算守恒的细菌代谢模块的识别
Genetic and Computational Identification of a Conserved
Bacterial Metabolic Module
1 2,3,4 3 3 1
Cara C. Boutte , Balaji S. Srinivasan , Jason A. Flannick , Antal F. Novak , Andrew T. Martens ,
3 5 1,6,7
Serafim Batzoglou , Patrick H. Viollier , Sean Crosson *
1 Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois, United States of America, 2 Department of Statistics, Stanford University,
Stanford, California, United States of America, 3 Department of Computer Science, Stanford University, Stanford, California, United States of America, 4 Stanford Genome
Technology Center, Stanford University, Palo Alto, California, United States of America, 5 Department of Molecular Biology and Microbiology, Case Western Reserve
University, Cleveland, Ohio, United States of America, 6 The Committee on Microbiology, University of Chicago, Chicago, Illinois, United States of America, 7 Graduate
Program in Biophysical Sciences, University of Chicago, Chicago, Illinois, United States of America
Abstract
We have experimentally and computationally defined a set of genes that form a conserved metabolic module in the a-
proteobacterium Caulobacter crescentus and used this module to illustrate a schema for the propagation of pathway-level
annotation across bacterial genera. Applying comprehensive forward and reverse genetic methods and genome-wide
transcriptional analysis, we (1) confirmed the presence of genes involved in catabolism of the abundant environmental
sugar myo-inositol, (2) defined an operon encoding an ABC-family myo-inositol transm
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