agdbnet – antigen sequence database software for bacterial typingagdbnetu2014u2014抗原序列数据库软件的细菌类型.pdfVIP

agdbnet – antigen sequence database software for bacterial typingagdbnetu2014u2014抗原序列数据库软件的细菌类型.pdf

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agdbnet – antigen sequence database software for bacterial typingagdbnetu2014u2014抗原序列数据库软件的细菌类型

BMC Bioinformatics BioMed Central Software Open Access AgdbNet – antigen sequence database software for bacterial typing Keith A Jolley* and Martin CJ Maiden Address: The Peter Medawar Building for Pathogen Research and Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3SY, UK Email: Keith A Jolley* - keith.jolley@medawar.ox.ac.uk; Martin CJ Maiden - martin.maiden@zoo.ox.ac.uk * Corresponding author Published: 21 June 2006 Received: 26 May 2006 Accepted: 21 June 2006 BMC Bioinformatics 2006, 7:314 doi:10.1186/1471-2105-7-314 This article is available from: /1471-2105/7/314 © 2006 Jolley and Maiden; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Bacterial typing schemes based on the sequences of genes encoding surface antigens require databases that provide a uniform, curated, and widely accepted nomenclature of the variants identified. Due to the differences in typing schemes, imposed by the diversity of genes targeted, creating these databases has typically required the writing of one-off code to link the database to a web interface. Here we describe agdbNet, widely applicable web database software that facilitates simultaneous BLAST querying of multiple loci using eith

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