agdbnet – antigen sequence database software for bacterial typingagdbnetu2014u2014抗原序列数据库软件的细菌类型.pdfVIP
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agdbnet – antigen sequence database software for bacterial typingagdbnetu2014u2014抗原序列数据库软件的细菌类型
BMC Bioinformatics BioMed Central
Software Open Access
AgdbNet – antigen sequence database software for bacterial typing
Keith A Jolley* and Martin CJ Maiden
Address: The Peter Medawar Building for Pathogen Research and Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1
3SY, UK
Email: Keith A Jolley* - keith.jolley@medawar.ox.ac.uk; Martin CJ Maiden - martin.maiden@zoo.ox.ac.uk
* Corresponding author
Published: 21 June 2006 Received: 26 May 2006
Accepted: 21 June 2006
BMC Bioinformatics 2006, 7:314 doi:10.1186/1471-2105-7-314
This article is available from: /1471-2105/7/314
© 2006 Jolley and Maiden; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: Bacterial typing schemes based on the sequences of genes encoding surface antigens
require databases that provide a uniform, curated, and widely accepted nomenclature of the
variants identified. Due to the differences in typing schemes, imposed by the diversity of genes
targeted, creating these databases has typically required the writing of one-off code to link the
database to a web interface. Here we describe agdbNet, widely applicable web database software
that facilitates simultaneous BLAST querying of multiple loci using eith
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