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BMC Bioinformatics BioMed Central Research article Open Access An improved map of conserved regulatory sites for Saccharomyces cerevisiae Kenzie D MacIsaac†1,2, Ting Wang†3, D Benjamin Gordon1,4, 1,2 3 1,2,5 David K Gifford , Gary D Stormo and Ernest Fraenkel* 1 2 Address: Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA, MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar St., Cambridge, MA 02139, USA, 3Department of Genetics, Washington University Medical School, St. Louis, MO 63110, USA, 4Agilent Technologies, 245 1st Street, Cambridge, MA 02142, USA and 5Biological Engineering Division, Massachusetts Institute of Technology, Cambridge, MA 02139, USA Email: Kenzie D MacIsaac - macisaac@; Ting Wang - twang@; D Benjamin Gordon - dbg1000@; David K Gifford - dkg@; Gary D Stormo - stormo@; Ernest Fraenkel* - fraenkel-admin@ * Corresponding author †Equal contributors Published: 07 March 2006 Received: 09 September 2005 Accepted: 07 March 2006 BMC Bioinformatics2006, 7:113 doi:10.1186/1471-2105-7-113 This article is available from: /1471-2105/7/113 © 2006MacIsaac et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0), which permits unrestricted use, distribution, and reproductio