DNA序列互补匹配特征分析及可视化系统.pdf

Hans Journal of Computational Biology 计算生物学, 2015, 5(4), 49-57 Published Online December 2015 in Hans. /journal/hjcb /10.12677/hjcb.2015.54006 The Analysis and Visualization System of the Complementary and Matching Features of DNA Sequences 1 2 Wenjia Liu , Zhijie Zheng 1 School of Software, Yunnan University, Kunming Yunnan 2 Key Laboratory of Information Security, School of Software, Yunnan University, Kunming Yunnan th th th Received: Nov. 18 , 2015; accepted: Dec. 4 , 2015; published: Dec. 8 , 2015 Copyright © 2015 by authors and Hans Publishers Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). /licenses/by/4.0/ Abstract Due to the complementary symmetry properties of the double helix of DNA sequence and compli- cated space structure, exploring long-range DNA pieces matching characteristics, especially on the complementary relationship has important significance. In this paper, the substring-complementary string matching technique is used to predict the possible structure of hairpin structure and detect palindromic structure in DNA sequences. With using statistical measurement method to processing DNA, and comparing with the results of analysis, visualization of measured-date, large amounts of complex DNA sequences can be analyzed speedy. Through the results, the matching structure in se- lective DNA sequence does exist in long distance. Visualization methods, the analysis of the charac- teristics of the measuring model and extract visual mechanism given in the paper can provide a model and practice foundation for different DNA sequence data, and the applic