Transcriptome characterization of Ishige okamurae （Phaeophyceae） shows strong environmental acclimation.pdf

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Transcriptome characterization of Ishige okamurae （Phaeophyceae） shows strong environmental acclimation.pdf

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ActaOceano1．Sin．，2014，Vo1．33，No．2，P20-26 DOI：l0．1007／s13131．014．04372 http：／／www．hyxb．org．cn E—mail：hyxbe@263．net TranscriptomecharacterizationofIshigeokamurae (Phaeophyceae)showsstrongenvironmentalacclimation QUJieqiong，WANGXumin，弘，CHIShan，WUShuangxiu ，SUNJing-v，LIUCui， CHENShengping4，YUJun-u，LIUTao CollegeofMarineLifeScience，OceanUniversityofChina，Qingdao266003，China CASKeyLaboratoryofGenomeSciencesandInformation，BeijingKeyLaboratoryofGenomeand PrecisionMedicineTechnologies，BeijingInstituteofGenomics，ChineseAcademyofSciences，Beijing 100101，China 。BeijingKeyLaboratoryofFunctionalGenomicsforDao—diHerbs，BeijingInstituteofGenomics，Chinese AcademyofSciences，Beijing100101，China GuangdongProvinceKeyLaboratory ofFunctionalMoleculesinOceanicMicroorganism ，ZhongShan SchoolofMedicine，SunYat—SenUniversiyt,Guangzhou510080，China Received27March2013；accepted17July2013 OTheChineseSocietyofOceanographyandSpringer—VerlagBerlinHeidelberg2014 Abstract Ishigeokamurae，withleathery branchednarrowrfondsconsistingofcylindrical hairs，isthetypicalspecies ofthegenuslshige，whichisconsideredasoneofthemostbasalgenerainthephylogenyofthePhaeophy— ceae．Apartrfom greatpublicinterestfrom theevolutionaryrespect．moreattentionhasbeenbroughton hteabundantbioactivecompoundsin okamuraefortherapeuticoreconom iccOnsiderations．suchasdi— phlorethohydroxycarmalolandishigoside．Yetlittleisknownaboutrelatedkeygenesormetabolicpahtways involvedin上okamurae,whichcallsuponustocarryoutglobalanalysesoftranscriptomebynextgeneration sequencing．Altogehter,weobtained78583assembledscaffoldswi thN50of1709nucleotides．and25357 unigeneswi thsignificantBLASTmatches(E—valueCUtOffof10—1．Interm sofcharacterizationofthetran— scriptomeof okamurae。wefocusedonanti—stressmetabolicpathwaysandsynhteticroutesofbioactive compoundsinanattempttoobtainabetterunderstandingofhteinteractiveorganism ．environmentregula— t0ry networks．Pathway—basedanalysishelpedustodeepenourcomprehensionofhteinteractionbetw