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FlowJo
Basic Tutorial
FlowJo is software for the analysis of flow cytometry data. This tutorial will quickly
introduce you to FlowJo using an example experiment, where a FITC anti-CD8 reagent is
titrated to determine the most economical concentration for staining in future experiments.
Table of Contents
Introduction 1
Step 1: Load samples into the workspace 3
Step 2: Analyze the control sample in detail 7
Step 3: Copy gates and statistics to all samples 12
Step 4: Verify gates on all samples 13
Step 5: Generate a graphical report 17
Step 6: Generate a table of statistics 23
FlowJo is a product of Tree Star, Inc.
www.FlowJ
USA: (800) 366-6045
International: 1 541-201-0022
flowjo@
FlowJo was written by Adam Treister and Mario Roederer in 1996,
based on concepts developed at the Herzenberg laboratory at Stanford.
We are indebted to our active and enthusiastic users worldwide for their
ideas, discussions and tireless testing of new versions.
FlowJo, its tutorials, documentation and web site are Copyright © Tree Star, Inc.
1997-2009. All Rights Reserved.
• FlowJo Basic Tutorial •
July 2009 - V.7.5
• © MMIX•
Basic Tutorial
Introduction
FlowJo software is used for the analysis of flow cytometry data. You can use FlowJo
to analyze all of your flow cytometry data - regardless of the cytometer used to collect
your data files. This tutorial will introduce you to FlowJo and
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