生物信息学题目.docVIP

第一次课1.Please search one article via PubMED and give the abstract:Liu WY, et al. The OsDHODH1 gene is involved in salt and drought tolerance in rice. , J Integr Plant Biol. 2009 Sep;51(9):825-33 (OK)2. Please search the articles about human cancer research published before 2005.(OK)3. Please search all the articles related to rice yield, published in “Nature”.(OK)4. Please search all literatures published from 2000 to now, by authors from Nanjing Agricultural University.(OK)5. Please search all articles from your laboratory, published in 2010, and save all the abstracts in your local computer.(OK)6. Please search literatures involved in flower development, written by Dr. Zhang, after 2002.(OK) 第二次课Search the NR database to check the ZFP252 paralogues in rice and orthologues in other plant speciesprotein中ZFP252，直接runblast 2. Search for dbEST database to find ESTs of ZFP252, then check the sources of ZFP252 expression.(OK)3. Search for rice zinc finger proteins related article(s) in PubMED database.（OK）1.Search for rice gene ZFP252 in GenBank, give the gene length and number of amino acids; Check whether some ZFP252 articles were published. 在基因库中搜寻ZFP252，基因长度和氨基酸数目，检测文章是否发表Nucleotide中ZFP2522. Search UniGene database for rice gene ZFP252 and seek for the tissues in which ZFP252 is transcribed.UNIGENE3. See the GEO profile of ZFP252 and check what factors regulate ZFP252 expression.U…GEO4. Try to download the data for salt responsive small RNA analysis in cotton and open it in Excel program.GEO DATESETSCotton[organism] AND MiRNA AND salt第三次课1.Find ZFP252 protein sequence from rice;从水稻中找到ZFP252蛋白序列2.Randomly pick four ZFP252-like protein sequences from various plant species;从各种植物物种中随机选四种与ZFP252相似序列….RUNBLAST3.Multiple sequence alignment for above 4-5 sequences. Copy the alignment into Ms-Word or PPT.以上45序列序列多样性组合多序列比对Find rice ZFP252 sequence and use the sequence to find at least three different ZFP252-like protein sequences in different plant species. Protein ZFP252 2Fi