科学计算常用的基础并行求解软件库介绍.ppt

* * * * * * * * * * * * PETSc、TAO、SLEPc的应用 医学，如三维超声心电图的研究、三维心肌图像恢复模拟问题、脑模型、计算生物学。 L. Carracciuolo et al., Towards a parallel component for imaging in PETSc programming environment: A case study in 3-D echocardiography, Parallel Computing, 32 (2006), 67—83. P. Colli Franzone et al., Simulating patterns of excitation, repolarization and action potential duration with cardiac Bidomain and Monodomain models, Mathematical Biosciences, 197 (2005), 35—66. Prashanth Dumpuri et al., An atlas-based method to compensate for brain shift: Preliminary results, Medical Image Analysis, 11 (2007), 128—145. Joe Pitt-Francis et al., Chaste: A test-driven approach to software development for biological modeling, Computer Physics Communications, 40th Anniversary Issue. PETSc、TAO、SLEPc的应用 动力学，如地球动力学模拟、烟囱中由热化学对流引起的灰尘定向凝固模拟、回转动力学粒子模拟、在微流控芯片中粒子流动和运动现象的电动学模拟、化学工程中的分子动力学模拟、Bose Hubbard 模型（气态Bose–Einstein冷凝物动力学）、磁流体动力学等。 R.F. Katz et al., Numerical simulation of geodynamic processes with the Portable Extensible Toolkit for Scientific Computation, Physics of the Earth and Planetary Interiors, 163 (2007), 52—68. 烟囱： Richard F. Katz and M. Grae Worster, Simulation of directional solidification, thermochemical convection, and chimney formation in a Hele-Shaw cell, Journal of Computational Physics, 227 (2008), 9823—9840. Y. Nishimura et al., A finite element Poisson solver for gyrokinetic particle simulations in a global field aligned mesh, Journal of Computational Physics, 214 (2006), 657—671. Hypre 高性能预条件子Hypre（High Performance Preconditioners）由美国加州大学（UC）和劳伦斯-利弗莫尔国家实验室（LLNL）应用科学计算中心（CASC）开发。开发Hypre软件包的动机起因于美国能源部LLNL在研究国防、环境、能源和生物科学中的物理现象时开发的一些模拟代码。该软件包主要用于大规模并行计算机上求解大型稀疏线性方程组，主要目的是为用户提供高级并行预条件子。Hypre具有功能强大性、易用性、适应性和互动性等特点。 Hypre Solver Struct SStruct FEI IJ Jacobi ? SMG ? PFMG ? BoomerAMG ? ? ? ParaSails ? ? ? Euclid ? ? ? PILUT ? ? ? PCG ? ? ? ? GMRES ? ? ? ? Hypre Hypre 流体力学，如地下储水层复杂流模拟、正压大气模型（天气预测）、大气、海洋模型、可变粘性Stokes流问题等。 Eric Chénier et al, A collocated finite volume scheme to s