生物信息学 数据库讲述说明.ppt

Databases for Bioinformatics ;数据库的定义;数据库的定义;数据库管理技术发展的比较;数据库的主要特点;数据库系统组成;生物信息数据库的特征;/genbank/GenbankOverview.html;/Sitemap/samplerecord.html;LOCUS The LOCUS field contains a number of different data elements, including locus name, sequence length, molecule type, GenBank division, and modification date. DEFINITION Brief description of sequence; includes information such as source organism, gene name/protein name, or some description of the sequences function (if the sequence is non-coding). ACCESSION The unique identifier for a sequence record.? VERSION A nucleotide sequence identification number that represents a single, specific sequence in the GenBank database.? GI GenInfo Identifier sequence identification number, in this case, for the nucleotide sequence. If a sequence changes in any way, a new GI number will be assigned. Organism The formal scientific name for the source organism (genus and species, where appropriate) and its lineage, based on the phylogenetic classification scheme used in the?NCBI Taxonomy Database. AUTHORS List of authors in the order in which they appear in the cited article. source Mandatory feature in each record that summarizes the length of the sequence, scientific name of the source organism, and Taxon ID number. Can also include other information such as map location, strain, clone, tissue type, etc., if provided by submitter. Taxon A stable unique identification number for the taxon of the source oganism. A taxonomy ID number is assigned to each taxon (species, genus, family, etc.) in the?NCBI Taxonomy Database. CDS Coding sequence; region of nucleotides that corresponds with the sequence of amino acids in a protein (location includes start and stop codons). The CDS feature includes an amino acid?translation. protein_id A protein sequence identification number, similar to the Version?number of a nucleotide sequence. Protein IDs consist of three letters followed by five digits, a dot, and a version number. gene A region of biol