SequenceAlignmentandDatabaseSearching.ppt

Sequence Alignment and Database Searching Milan Mosny SFU Sources Shamir, Ron “Algorithms for Molecular Biology, Fall Semester, 2001, Lectures 1 - 3” Altshul, S.F., Fish, W. Miller, W. Myers, E.W. Lipman, D.J. (1990) “Basic local alignment search tool”, Journal of Molecular Biology, 215:403-410 Altshul, S.F., Madden, T.L., Saffer, A.A., Ashang, J., Zhang, Z. Miller, W. and Lipman, D.J. (1997) “gapped BLAST and PSI-BLAST: a new generation of protein database search programs.” Nucleic Acids Res. 25:33389-3402 Sources Karlin, S. and Altshul, S.F. (1990) “Methods for Assessing the Statistical Si