Analysing the changes of amino acid usage frequencies during viridiplantae evolution【DOC精选】.docVIP

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Analysing the changes of amino acid usage frequencies during viridiplantae evolution【DOC精选】.doc

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Analysing the changes of amino acid usage frequencies during viridiplantae evolution Bian Chunxiang1, 2 Email: abzyme123@163.com Ruan Qiping1* *Corresponding author Zhao Hong2 Liao Min2 1Key laboratory for Molecular Biology and Biopharmaceuticals, Mianyang Normal University, Sichuan, 621000, China 2 College of Life Sciences and Biotechnology, Mianyang Normal University, Sichuan, 621000, China Abstract Viridiplantae are known to originate（来源） from one phylum（门） of green algae（海藻）, streptophyte algae, and form a single evolutionary lineage. The evolution of viridiplantae mainly follows the course from the earliest green algae to bryophyte（苔藓）, pteridophytes and spermatophytes. As the result analysis of their proteomes（蛋白质组） has the potential of revealing（透露真情的，启发人的） how amino acid usage frequencies within proteins have evolved over biological time. In the paper, 655 proteins (including 452,672aa) of six proteomes from green algae (Chlamydomonas reinhardtii; Ostreococcus lucimarinus), bryophyte (Physcomitrella patens) and spermatophytes (Cryptomeria japonica; Nicotiana tabacum; Arabidopsis thaliana) were analysed. The results showed that most amino acid usage frequencies decreasing (especially AGVE) or increasing (especially YFNIKS) follow fixed patterns from green algae to bryophyte and spermatophytes. By exploring discrepancies of amino acid usage frequencies among taxonomic（分类的） groups, it was found that the frequencies performed a bigger change when plant evolved form algae to bryophyte than those from bryophyte to spermatophytes. Meanwhile data also showed that amino acid residues（剩余物，残渣） have the similar usage frequencies in species with close evolutionary distance. In addition, 239 proteins (including 130,138aa) from red algae proteomes (Guillardia theta and Hemiselmis andersenii) were also analysed. Comparing with green algae, these amino acid frequencies have distinctly（清楚地，无疑的） differences. The frequencies of AGVR i