supplementaltables1.ricestarchsynthesisgenesthatare.docVIP

Supplemental Table S1. Rice starch synthesis genes that are used as “guide genes” for co-expression analysis. If a gene is represented by multiple probe sets, one of them will be determined by the matched position on gene and specificity of probe set (Affymatrix annotation). Name Gene product Probe set Locus No. OsAGPL1 ADP-glucose pyrophosphorylase large subunit 1 Os.4166.1.S1_at LOC_Os05g50380 OsAGPL2 ADP-glucose pyrophosphorylase large subunit 2 Os.6732.1.S1_a_at LOC_Os01g44220 OsAGPL3 ADP-glucose pyrophosphorylase large subunit 3 Os.20397.1.S1_a_at LOC_Os03g52460 OsAGPL4 ADP-glucose pyrophosphorylase large subunit 4 Os.25696.2.S1_x_at LOC_Os07g13980 OsAGPS1 ADP-glucose pyrophosphorylase small subunit 1 Os.3122.1.S1_at LOC_Os09g12660 OsAGPS2 ADP-glucose pyrophosphorylase small subunit 2 Os.178.1.S1_a_at LOC_Os08g25734 OsSSI Starch synthase I Os.12725.1.S1_at LOC_Os06g06560 OsSSIIa Starch synthase IIa Os.5738.1.S1_at LOC_Os06g12450 OsSSIIb Starch synthase IIb Os.13018.1.S1_a_at LOC_Os02g51070 OsSSIIc Starch synthase IIc Os.9108.1.S1_a_at LOC_Os10g30156 OsSSIIIa Starch synthase IIIa Os.14006.1.S1_at LOC_Os08g09230 OsSSIIIb Starch synthase IIIb Os.23163.1.S1_at LOC_Os04g53310 OsSSIVa Starch synthase IVa Os.11335.3.S1_x_at LOC_Os01g52260 OsSSIVb Starch synthase IVb Os.11849.1.S1_at LOC_Os05g45720 OsGBSSI Granule-bound starch synthase I Os.11244.1.S1_at LOC_Os06g04200 OsGBSSII Granule-bound starch synthase II Os.9212.1.S1_at LOC_Os07g22930 OsBEI Starch branching enzyme I Os.22169.1.S1_a_at LOC_Os06g51084 OsBEIIa Starch branching enzyme IIa Os.4179.1.S1_at LOC_Os04g33460 OsBEIIb Starch branching enzyme IIb Os.6796.1.S1_a_at LOC_Os02g32660 OsISA1 Starch debranching enzyme: Isoamylase I Os.3414.1.A1_at LOC_Os08g40930 OsISA2 Starch debranching enzyme: Isoamylase II Os.25202.1.S1_at LOC_Os05g32710 OsISA3 Starch debranching enzyme: Isoamylase III Os.54050.1.S1_at LOC_Os09g29404 OsPUL Starch debranching enzyme: Pullulanase Os.361.1.S1_at LOC_Os04g08