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Ultra-fast sequence clustering from similarity networks with SiLiX 英文论文文献
Mieleetal.BMCBioinformatics2011,12:116
/1471-2105/12/116
SOFTWARE
OpenAccess
Ultra-fastsequenceclusteringfromsimilarity
networkswithSiLiX
VincentMiele*,SimonPenelandLaurentDuret
Abstract
Background:Thenumberofgenesequencesthatareavailableforcomparativegenomicsapproachesis
increasingextremelyquickly.Acurrentchallengeistobeabletohandlethishugeamountofsequencesinorder
tobuildfamiliesofhomologoussequencesinareasonabletime.
Results:WepresentthesoftwarepackageSiLiXthatimplementsanovelmethodwhichreconsiderssingle
linkageclusteringwithagraphtheoreticalapproach.Aparallelversionofthealgorithmsisalsopr
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