Ultra-fast sequence clustering from similarity networks with SiLiX 英文论文文献.docVIP

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Ultra-fast sequence clustering from similarity networks with SiLiX 英文论文文献.doc

Ultra-fast sequence clustering from similarity networks with SiLiX 英文论文文献

Mieleetal.BMCBioinformatics2011,12:116 /1471-2105/12/116 SOFTWARE OpenAccess Ultra-fastsequenceclusteringfromsimilarity networkswithSiLiX VincentMiele*,SimonPenelandLaurentDuret Abstract Background:Thenumberofgenesequencesthatareavailableforcomparativegenomicsapproachesis increasingextremelyquickly.Acurrentchallengeistobeabletohandlethishugeamountofsequencesinorder tobuildfamiliesofhomologoussequencesinareasonabletime. Results:WepresentthesoftwarepackageSiLiXthatimplementsanovelmethodwhichreconsiderssingle linkageclusteringwithagraphtheoreticalapproach.Aparallelversionofthealgorithmsisalsopr

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