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A Compact Statistical Model of the Song Syntax in Bengalese Finch 英文参考文献
ACompactStatisticalModeloftheSongSyntaxin
BengaleseFinch
DezheZ.Jin*,AlexayA.Kozhevnikov
DepartmentofPhysics,ThePennsylvaniaStateUniversity,UniversityPark,Pennsylvania,UnitedStatesofAmerica
Abstract
Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for
characterizingthesyntaxofthesecomplexsyllablesequencesistousetransitionprobabilitiesbetweenthesyllables.Thisis
equivalent to the Markov model, in which each syllable is associated with one state, and the transition probabilities
betweenthestatesdonotdependonthestatetransitionhistory.HereweanalyzethesongsyntaxinBengalesefinch.We
showthattheMarkovmodelfailstocapturethestatisticalpropertiesofthesyllablesequences.Instead,astatetransition
model that accurately describes the statistics of the syllable sequences includes adaptation of the self-transition
probabilities when states are revisited consecutively, and allows associations of more than one state to agiven syllable.
Such a model does not increase the model complexity significantly. Mathematically, the model is a partially observable
Markovmodelwithadaptation(POMMA).ThesuccessofthePOMMAsupportsthebranchingchainnetworkmodelofhow
syntaxiscontrolledwithinthepremotorsongnucleusHVC,butalsosuggeststhatadaptationandmany-to-onemapping
fromthesyllable-encodingchainnetworksinHVCtosyllablesshouldbeincludedinthenetworkmodel.
Citation: JinDZ,Kozhevnikov AA(2011)ACompact Statistical ModeloftheSongSyntaxinBengaleseFinch.PLoSComput Biol7(3):e1001108. doi:10.1371/
journal.pcbi.1001108
Editor:KarlJ.Friston,UniversityCollegeLondon,UnitedKingdom
ReceivedSeptember8,2010;AcceptedFebruary10,2011;PublishedMarch17,2011
Copyright:?2011Jin,Kozhevnikov.Thisisanopen-accessarticledistributedunderthetermsoftheCreativeCommonsAttributionLicense,whichpermits
unrestricteduse,distribution,andreproductioninanymedium,providedtheoriginalauthorandsourcearecredited.
Funding:ThisresearchwassupportedbytheHuckInstituteofLifeScienceatthePenns
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