Galectin-3 and Beclin1Atg6 Genes In Human Cancers Using cDNA Tissue Panel, qRT-PCR, and Logistic Regression Model to Identify Cancer Cell Biomarkers 英文参考文献.docVIP
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Galectin-3 and Beclin1Atg6 Genes In Human Cancers Using cDNA Tissue Panel, qRT-PCR, and Logistic Regression Model to Identify Cancer Cell Biomarkers 英文参考文献
Galectin-3andBeclin1/Atg6GenesInHumanCancers:
UsingcDNATissuePanel,qRT-PCR,andLogistic
RegressionModeltoIdentifyCancerCellBiomarkers
HallidayA.Idikio*
DepartmentofLaboratoryMedicineandPathology,UniversityofAlberta,Edmonton,Alberta,Canada
Abstract
Background:Cancerbiomarkersaresoughttosupportcancerdiagnosis,predictcancerpatientresponsetotreatmentand
survival. Identifying reliable biomarkers for predicting cancer treatment response needs understanding of all aspects of
cancercelldeathandsurvival.Galectin-3andBeclin1areinvolvedintwocoordinatedpathwaysofprogrammedcelldeath,
apoptosis and autophagy and are linked to necroptosis/necrosis. The aim of the study was to quantify galectin-3 and
Beclin1mRNAinhumancancertissuecDNApanelsanddeterminetheirutilityasbiomarkersofcancercellsurvival.
Methods and Results: A panel of 96 cDNAs from eight (8) different normal and cancer tissue types were used for
quantitativereal-timepolymerasechainreaction(qRT-PCR)usingABI7900HT.Miner2.0,aweb-based4-and3-parameter
logisticregressionsoftwarewasusedtoderiveindividualwellpolymerasechainreactionefficiencies(E)andcyclethreshold
(Ct)values.MinersoftwarederivedformulawasusedtocalculatemRNAlevelsandthenfoldchanges.Theratiosofcancerto
normal tissue levels of galectin-3 and Beclin1 were calculated (using the mean for each tissue type). Relative mRNA
expressions for galectin-3 were higher than for Beclin1 in all tissue (normal and cancer) types. In cancer tissues, breast,
kidney, thyroid and prostate had the highestgalectin-3 mRNA levels compared tonormal tissues. High levelsof Beclin1
mRNAlevelswereinliverandprostatecancerswhencomparedtonormaltissues.Breast,kidneyandthyroidcancershad
highgalectin-3levelsandlowBeclin1levels.
Conclusion:Galectin-3expressionpatternsinnormalandcancertissuessupportitsreportedrolesinhumancancer.Beclin1
expressionpatternsupportsitsrolesincancercellsurvivalandintreatmentresponse.qRT-PCRanalysismethodusedmay
enable high throughput studies to generate molecular biomarker se
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