Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds 英文参考文献.docVIP

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2017-05-11 发布于上海
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Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds 英文参考文献.doc

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Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds 英文参考文献

Genome-WideAnalysisoftheComplexTranscriptional NetworksofRiceDevelopingSeeds Liang-JiaoXue,Jing-JingZhang,Hong-WeiXue* NationalKeyLaboratoryofPlantMolecularGenetics,InstituteofPlantPhysiologyandEcology,ShanghaiInstitutesforBiologicalSciences,ChineseAcademyofSciences, Shanghai,China Abstract Background:Thedevelopmentofrice(Oryzasativa)seediscloselyassociatedwithassimilatesstorageandplantyield,and is fine controlled by complex regulatory networks. Exhaustive transcriptome analysis of developing rice embryo and endospermwillhelptocharacterizethegenespossiblyinvolvedintheregulationofseeddevelopmentandprovidecluesof yieldandqualityimprovement. Principal Findings: Our analysis showed that genes involved in metabolism regulation, hormone response and cellular organizationprocessesarepredominantlyexpressedduringricedevelopment.Interestingly,191transcriptionfactor(TF)- encodinggenesarepredominantlyexpressedinseedand59TFsareregulatedduringseeddevelopment,someofwhich are homologs of seed-specific TFs or regulators of Arabidopsis seed development. Gene co-expression network analysis showedtheseTFsassociatedwithmultiplecellularandmetabolismpathways,indicatingacomplexregulationofriceseed development.Further,byemployingacold-resistantcultivarHanfeng(HF),genome-wideanalysesofseedtranscriptomeat normalandlowtemperaturerevealthatriceseedissensitivetolowtemperatureatearlystageandmanygenesassociated withseeddevelopmentaredown-regulatedbylowtemperature,indicatingthatthedelayeddevelopmentofriceseedby lowtemperatureismainlycausedbytheinhibitionofthedevelopment-relatedgenes.Thetranscriptionalresponseofseed and seedling to low temperature is different, and the differential expressions of genes in signaling and metabolism pathwaysmaycontributetothechillingtoleranceofHFduringseeddevelopment. Conclusions: These results provide informative clues and will significantly improve the understanding of rice seed developmentregulationandthemechanismofcoldresponseinriceseed. Citation:XueL-J,ZhangJ-J,Xu