Persistence of accuracy of genomic estimated breeding values over generations in layer chickens 英文参考文献.docVIP
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Persistence of accuracy of genomic estimated breeding values over generations in layer chickens 英文参考文献
Wolcetal.GeneticsSelectionEvolution2011,43:23
/content/43/1/23
G
enetics
Selection
Evolution
RESEARCH
OpenAccess
Persistenceofaccuracyofgenomicestimated
breedingvaluesovergenerationsinlayerchickens
AnnaWolc1,2*,JesusArango3,PetekSettar3,JanetEFulton3,NeilPO’Sullivan3,RudolfPreisinger4,DavidHabier2,
RohanFernando2,DorianJGarrick2andJackCMDekkers2
Abstract
Background:Thepredictiveabilityofgenomicestimatedbreedingvalues(GEBV)originatesbothfromassociations
betweenhigh-densitymarkersandQTL(QuantitativeTraitLoci)andfrompedigreeinformation.Thus,GEBVare
expectedtoprovidemorepersistentaccuracyoversuccessivegenerationsthanbreedingvaluesestimatedusing
pedigree-basedmethods.TheobjectiveofthisstudywastoevaluatetheaccuracyofGEBVinaclosedpopulation
oflayerchickensandtoquantifytheirpersistenceoverfivesuccessivegenerationsusingmarkerorpedigree
information.
Methods:Thetrainingdataconsistedof16traitsand777genotypedanimalsfromtwogenerationsofabrown-egg
layerbreedingline,295ofwhichhadindividualphenotyperecords,whileothershadphenotypeson2,738non-
genotypedrelatives,orsimilardataaccumulatedoveruptofivegenerations.Validationdataincludedphenotyped
andgenotypedbirdsfromfivesubsequentgenerations(onaverage306birds/generation).Birdsweregenotypedfor
23,356segregatingSNP.AnimalmodelsusinggenomicorpedigreerelationshipmatricesandBayesianmodel
averagingmethodswereusedfortraininganalyses.AccuracywasevaluatedasthecorrelationbetweenEBVand
phenotypeinvalidationdividedbythesquarerootoftraitheritability.
Results:Pedigreerelationshipsinoutbredpopulationsarereducedby50%ateachmeiosis,thereforeaccuracyis
expectedtodecreasebythesquarerootof0.5everygeneration,asobservedforpedigree-basedEBV(Estimated
BreedingValues).IncontrasttheGEBVaccuracywasmorepersistent,althoughthedropinaccuracywassubstantial
inthefirstgeneration.TraitsthatwereconsideredtobeinfluencedbyfewerQTLandtohaveahigherheritability
maintainedahigherGEBVaccuracyovergenerations.Inconclusion,GEBVcaptureinformationbeyondpedigree
relationships,butretrai
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