PoreWalker A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure 英文参考文献.docVIP

下载本文档

3
0
约6.13万字
约 16页
2017-05-12 发布于上海
举报
版权申诉

PoreWalker A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure 英文参考文献.doc

1、本文档共16页，可阅读全部内容。
2、原创力文档（book118）网站文档一经付费（服务费），不意味着购买了该文档的版权，仅供个人/单位学习、研究之用，不得用于商业用途，未经授权，严禁复制、发行、汇编、翻译或者网络传播等，侵权必究。
3、本站所有内容均由合作方或网友上传，本站不对文档的完整性、权威性及其观点立场正确性做任何保证或承诺！文档内容仅供研究参考，付费前请自行鉴别。如您付费，意味着您自己接受本站规则且自行承担风险，本站不退款、不进行额外附加服务；查看《如何避免下载的几个坑》。如果您已付费下载过本站文档，您可以点击这里二次下载。
4、如文档侵犯商业秘密、侵犯著作权、侵犯人身权等，请点击“版权申诉”（推荐），也可以打举报电话：400-050-0827(电话支持时间：9:00-18:30)。
5、该文档为VIP文档，如果想要下载，成为VIP会员后，下载免费。
6、成为VIP后，下载本文档将扣除1次下载权益。下载后，不支持退款、换文档。如有疑问请联系我们。
7、成为VIP后，您将拥有八大权益，权益包括：VIP文档下载权益、阅读免打扰、文档格式转换、高级专利检索、专属身份标志、高级客服、多端互通、版权登记。
8、VIP文档为合作方或网友上传，每下载1次，网站将根据用户上传文档的质量评分、类型等，对文档贡献者给予高额补贴、流量扶持。如果你也想贡献VIP文档。上传文档

PoreWalker A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure 英文参考文献

PoreWalker:ANovelToolfortheIdentificationand CharacterizationofChannelsinTransmembraneProteins fromTheirThree-DimensionalStructure MarialuisaPellegrini-Calace*.,TimMaiwald¤.,JanetM.Thornton EMBL/EBI,TheWellcomeTrustGenomeCampus,Cambridge,UnitedKingdom Abstract Transmembrane channel proteins play pivotal roles in maintaining the homeostasis and responsiveness of cells and the cross-membrane electrochemical gradient by mediating the transport of ions and molecules through biological membranes. Therefore, computational methods which, given a set of 3D coordinates, can automatically identify and describechannelsintransmembraneproteinsarekeytoolstoprovideinsightsintohowtheyfunction. Hereinwepresent PoreWalker,afullyautomatedmethod,whichdetectsandfullycharacteriseschannelsintransmembraneproteinsfromtheir 3Dstructures.Astepwiseprocedureisfollowedinwhichtheporecentreandporeaxisarefirstidentifiedandoptimised usinggeometriccriteria,andthenthebiggestandlongestcavitythroughthechannelisdetected.Finally,porefeatures, including diameter profiles, pore-lining residues, size, shape and regularity of the pore are calculated, providing a quantitativeandvisualcharacterizationofthechannel.Toillustratetheuseofthistool,themethodwasappliedtoseveral structures of transmembrane channel proteins and was able to identify shape/size/residue features representative of specificchannelfamilies.Thesoftwareisavailableasaweb-basedresourceathttp://www.ebi.ac.uk/thornton-srv/software/ PoreWalker/. Citation:Pellegrini-CalaceM,MaiwaldT,ThorntonJM(2009)PoreWalker:ANovelToolfortheIdentificationandCharacterizationofChannelsinTransmembrane ProteinsfromTheirThree-DimensionalStructure.PLoSComputBiol5(7):e1000440.doi:10.1371/journal.pcbi.1000440 Editor:ThomasLengauer,Max-Planck-Institutfu¨rInformatik,Germany ReceivedNovember18,2008;AcceptedJune17,2009;PublishedJuly17,2009 Copyright:?2009Pellegrini-Calaceetal.Thisisanopen-accessarticledistributedunderthetermsoftheCreativeCommonsAttributionLicense,which