Prediction by Promoter Logic in Bacterial Quorum Sensing 英文参考文献.docVIP

Prediction by Promoter Logic in Bacterial Quorum Sensing 英文参考文献.doc

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Prediction by Promoter Logic in Bacterial Quorum Sensing 英文参考文献

PredictionbyPromoterLogicinBacterialQuorum Sensing NavneetRai1,2,RajatAnand1,KrishnaRamkumar3,VarunSreenivasan4,SugatDabholkar1,K.V. Venkatesh2,MukundThattai1* 1NationalCentreforBiologicalSciences,TataInstituteofFundamentalResearch,UAS/GKVKCampus,Bangalore,India,2DepartmentofBioSciencesandBioengineering, IndianInstituteofTechnologyBombay,Powai,Mumbai,India,3DepartmentofChemistry,IndianInstituteofTechnologyBombay,Powai,Mumbai,India,4Departmentof BiologicalSciences,St.Xavier’sCollege,Mumbai,India Abstract Quorum-sensing systems mediate chemical communication between bacterial cells, coordinating cell-density-dependent processes like biofilm formation and virulence-factor expression. In the proteobacterial LuxI/LuxR quorum sensing paradigm, a signaling molecule generated by an enzyme (LuxI) diffuses between cells and allosterically stimulates a transcriptionalregulator(LuxR)toactivateitscognatepromoter(pR).ByexpressingeitherLuxIorLuxRinpositivefeedback frompR,theseversatilesystemscangeneratesmooth(monostable)orabrupt(bistable)density-dependentresponsesto suittheecologicalcontext.HerewecombinetheoryandexperimenttodemonstratethatthepromoterlogicofpR–its measuredactivityasafunctionofLuxIandLuxRlevels–containsallthebiochemicalinformationrequiredtoquantitatively predict the responses of such feedback loops. The interplay of promoter logic with feedback topology underlies the versatilityoftheLuxI/LuxRparadigm:LuxRandLuxIpositive-feedbacksystemsshowdramaticallydifferentresponses,while a dual positive/negative-feedback system displays synchronized oscillations. These results highlight the dual utility of promoterlogic:toprobemicroscopicparametersandpredictmacroscopicphenotype. Citation:RaiN,AnandR,RamkumarK,SreenivasanV,DabholkarS,etal.(2012)PredictionbyPromoterLogicinBacterialQuorumSensing.PLoSComputBiol8(1): e1002361.doi:10.1371/journal.pcbi.1002361 Editor:NicolasBuchler,DukeInstituteforGenomeSciencesPolicy,UnitedStatesofAmerica ReceivedJuly4,2011;AcceptedDecember8,2011;Pu

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