Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data The Swine Leukocyte Antigen Complex (SLA) as a Model Region 英文参考文献.docVIP

Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data The Swine Leukocyte Antigen Complex (SLA) as a Model Region 英文参考文献.doc

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Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data The Swine Leukocyte Antigen Complex (SLA) as a Model Region 英文参考文献

PredictionofAltered39-UTRmiRNA-BindingSitesfrom RNA-SeqData:TheSwineLeukocyteAntigenComplex (SLA)asaModelRegion Marie-LaureEndaleAhanda1,2,3,EricR.Fritz4,JordiEstelle′1,2,3,Zhi-LiangHu4,OleMadsen5, MartienA.M.Groenen5,DarioBeraldi6¤,RonanKapetanovic6,DavidA.Hume6,RobertR.R.Rowland7, JoanK.Lunney8,ClaireRogel-Gaillard1,2,3,JamesM.Reecy4,ElisabettaGiuffra1,2,3* 1INRA,UMR1313deGe′ne′tiqueAnimaleet BiologieInte′grative,DomainedeVilvert,Jouy-en-Josas,France, 2CEA,DSV,IRCM,SREIT, LaboratoiredeRadiobiologieet EtudeduGe′nome, DomainedeVilvert,Jouy-en-Josas,France,3AgroParisTech,LaboratoiredeGe′ne′tique AnimaleetBiologieInte′grative,DomainedeVilvert,Jouy-en- Josas, France, 4Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, United States of America, 5Animal BreedingandGenomicsCentre,WageningenUniversity,Wageningen,TheNetherlands,6TheRoslinInstituteandRoyal(Dick)SchoolofVeterinaryStudies,Universityof Edinburgh,Midlothian,UnitedKingdom,7DepartmentofDiagnosticMedicineandPathobiology,KansasStateUniversity,Manhattan,Kansas,UnitedStatesofAmerica, 8AnimalParasiticDiseasesLaboratory,BeltsvilleAgriculturalResearchCenter,AgriculturalResearchService,UnitedStatesDepartmentofAgriculture,Beltsville,Maryland, UnitedStatesofAmerica Abstract TheSLA(swineleukocyteantigen,MHC:SLA)genesarethemostimportantdeterminantsofimmune,infectiousdiseaseand vaccine response in pigs; several genetic associations with immunity and swine production traits have been reported. However,mostofthecurrentknowledgeonSLAislimitedtogenecodingregions.MicroRNAs(miRNAs)aresmallmolecules that post-transcriptionally regulate the expression of a large number of protein-coding genes in metazoans, and are suggested to play important roles in fine-tuning immune mechanisms and disease responses. Polymorphisms in either miRNAs or their gene targets may have a significant impact on gene expression by abolishing, weakening or creating miRNAtargetsites,possibly

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