TXTGate profiling gene groups with text-based information 英文参考文献.docVIP

Open Access So are V2004Glenissonetoal.lumeftw5, Issue 6, Article R43 TXTGate: profiling gene groups with text-based information Patrick Glenisson*, Bert Coessens*, Steven Van Vooren*, Janick Mathys*, Yves Moreau*? and Bart De Moor* Addresses: *Departement Elektrotechniek (ESAT), Faculteit Toegepaste Wetenschappen, Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, 3001 Heverlee (Leuven), Belgium. ?Current address: Center for Biological Sequence Analysis, BioCentrum, Danish Technical University, Kemitorvet, DK-2800 Lyngby, Denmark. Correspondence: Bert Coessens. E-mail: bert.coessens@esat.kuleuven.ac.be Published: 28 May 2004 Received: 24 November 2003 Revised: 3 February 2004 Accepted: 27 April 2004 Genome Biology 2004, 5:R43 The electronic version of this article is the complete one and can be found online at /2004/5/6/R43 ? 2004 Glenisson et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the articles original URL. pWemtoefrfineinrinegdgaosnimplementedyndsstlienmlekcsdtteeodsietgxenxteeatdurframeworknatol lfwireaelrsddossuatrnhcdcalledeesMaanElaloDlyTXTGatewLsiIfsNoorEfingar-bodsthatuetrptschotcombinessafnugaesenlydessi.snBoLliteratureyfotmchuesaLrneinsukolindicesftaitnnadgilotthererofmdvselectediptorcoSafabilcueclsha.publicrair/eopsm,tyecbiologicalrems-a/sitweGlresourcesleansogmeenDe-acinteanbatarflexibleisce.vSieuwbsctext-lareus Abstract We implemented a framework called TXTGate that combines literature indices of selected public biological resources in a flexible text-mining system designed towards the analysis of groups of genes. By means of tailored vocabularies, term- as well as gene-centric views are offered on selected textual fields and MEDLINE abstracts used in LocusLink and the Saccharomyces Genome Database. Subclustering and links to external resources