Estimation of breed contributions to present and future genetic diversity of 44 North Eurasian cattle breeds using core set diversity measures.docVIP

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Estimation of breed contributions to present and future genetic diversity of 44 North Eurasian cattle breeds using core set diversity measures.doc

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Estimation of breed contributions to present and future genetic diversity of 44 North Eurasian cattle breeds using core set diversity measures

Genet.Sel.Evol.38(2006)201–220 c INRA,EDPSciences,2006 DOI:10.1051/gse:2005036 201 Originalarticle Estimationofbreedcontributionstopresent andfuturegeneticdiversityof44North Eurasiancattlebreedsusingcoreset diversitymeasures J?rnBennewitz?a,JuhaKantanenb,IlmaTapiob, MengHuaLib,ErnstKalma,JohannaVilkkib, InnokentyiAmmosovc,ZoyaIvanovad,TatyanaKiselyovae, RuslanPopovf,TheoH.E.Meuwisseng a InstituteofAnimalBreedingandHusbandry,Christian-Albrechts-University, 24098Kiel,Germany b BiotechnologyandFoodResearch,MTTAgrifoodResearchFinland,31600Jokioinen, Finland c Batagay-Alyta,678580,Sakha,Russia YakutStateAgriculturalAcademy,Ul.Krasilnikova15,Yakutsk,677002,Sakha,Russia d e DepartmentofGeneticsandBiotechnology,All-RussianResearchInstituteforFarmAnimal GeneticsandBreeding,Moskowskoyeshosse–55a,189620St.Petersburg-Pushkin,Russia DepartmentofFarmAnimalsandBreeding,MinistryofAgricultureandResourcesofSakha, Yakutsk,677007,Sakha,Russia f g InstituteofAnimalandAquaculturalSciences,AgricultureUniversityofNorway,Box5052, 1432?s,Norway (Received13June2005;accepted26October2005) Abstract–Extinctionofbreedsthreatensgeneticdiversityoflivestockspecies.Theneedto conservegeneticdiversityiswidelyacceptedbutinvolvesingeneraltwoquestions:(i)isthe expectedlossofdiversityinasetofbreedswithinade?nedfuturetimehorizonlargeenoughto establishaconservationplan,andifso(ii)whichbreedsshouldbeprioritisedforsuchaconser- vationplan?Thepresentstudyusesamarkerassistedmethodologytoaddressthesequestions. Themethodologycombinescoresetdiversitymeasureswithastochasticmethodfortheesti- mationofexpectedfuturediversityandbreedmarginaldiversities.Thelatterisde?nedasthe changeinthetotaldiversityofallbreedscausedbyaoneunitdecreaseinextinctionproba- bilityofaparticularbreed.Thestochasticmethodwasvalidatedbymeansofsimulations.A large?elddatasetconsistingof44NorthEurasiancattlebreedswasanalysedusingsimpli?ed determinedextinctionprobabilities.Theresultsshowthattheexpectedlossofdiversityinthis setwithinthenext20to50yea