原创力文档a hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in “chromalveolate” membersnuclear-encoded的进化假说,plastid-targeted glyceraldehyde-3-phosphate脱氢酶基因在u201cchromalveolateu201d成员.pdfVIP
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a hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in “chromalveolate” membersnuclear-encoded的进化假说,plastid-targeted glyceraldehyde-3-phosphate脱氢酶基因在u201cchromalveolateu201d成员
A Hypothesis for the Evolution of Nuclear-Encoded,
Plastid-Targeted Glyceraldehyde-3-Phosphate
Dehydrogenase Genes in ‘‘Chromalveolate’’ Members
1 2 1 3
Kiyotaka Takishita *, Haruyo Yamaguchi , Tadashi Maruyama , Yuji Inagaki
1Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan, 2 Graduate School of Life and Environmental Sciences, University of
Tsukuba, Tsukuba, Ibaraki, Japan, 3 Center for Computational Sciences and Institute of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
Abstract
Eukaryotes bearing red alga-derived plastids — photosynthetic alveolates (dinoflagellates plus the apicomplexan
Toxoplasma gondii plus the chromerid Chromera velia), photosynthetic stramenopiles, haptophytes, and cryptophytes —
possess unique plastid-targeted glyceraldehyde-3-phosphate dehydrogenases (henceforth designated as ‘‘GapC1’’).
Pioneering phylogenetic studies have indicated a single origin of the GapC1 enzymes in eukaryotic evolution, but there
are two potential idiosyncrasies in the GapC1 phylogeny: Firstly, the GapC1 tree topology is apparently inconsistent with
the organismal relationship among the ‘‘GapC1-containing’’ groups. Secondly, four stramenopile GapC1 homologues are
consistently paraphyletic in previously published studies, although these organisms have been widely accepted as
monophyletic. For a closer examination of the above issues, in this study GapC1 gene sampling was improved by
determining/identifying nine stramenopile and two cryptophyte genes. Phylogenetic analyses of our GapC1 dataset, which
is particularly rich in the stramenopile homologues, prompt us to propose a ne
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