原创力文档a computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions计算的方法来发现细菌光敏色素的功能相同器官分布的分析.pdfVIP
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a computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions计算的方法来发现细菌光敏色素的功能相同器官分布的分析
BMC Bioinformatics BioMed Central
Research article Open Access
A computational approach to discovering the functions of bacterial
phytochromes by analysis of homolog distributions
Tilman Lamparter*
Address: Freie Universität Berlin, Pflanzenphysiologie, Königin-Luise Str. 12-16, D-14195 Berlin, Germany
Email: Tilman Lamparter* - lamparte@zedat.fu-berlin.de
* Corresponding author
Published: 16 March 2006 Received: 21 November 2005
Accepted: 16 March 2006
BMC Bioinformatics 2006, 7:141 doi:10.1186/1471-2105-7-141
This article is available from: /1471-2105/7/141
© 2006 Lamparter; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: Phytochromes are photoreceptors, discovered in plants, that control a wide variety
of developmental processes. They have also been found in bacteria and fungi, but for many species
their biological role remains obscure. This work concentrates on the phytochrome system of
Agrobacterium tumefaciens, a non-photosynthetic soil bacterium with two phytochromes. To
identify proteins that might share common functions with phytochromes, a co-distribution analysis
was performed on the basis of protein sequences from 138 bacteria.
Results: A database of protein se
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