原创力文档a new dynamical layout algorithm for complex biochemical reaction networks一种新的动态布局算法对于复杂的生化反应网络.pdfVIP
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a new dynamical layout algorithm for complex biochemical reaction networks一种新的动态布局算法对于复杂的生化反应网络
BMC Bioinformatics BioMed Central
Methodology article Open Access
A new dynamical layout algorithm for complex biochemical
reaction networks
Katja Wegner* and Ursula Kummer
Address: Bioinformatics and Computational Biochemistry, EML Research, Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany
Email: Katja Wegner* - Katja.Wegner@eml-r.villa-bosch.de; Ursula Kummer - Ursula.Kummer@eml-r.villa-bosch.de
* Corresponding author
Published: 26 August 2005 Received: 20 October 2004
Accepted: 26 August 2005
BMC Bioinformatics 2005, 6:212 doi:10.1186/1471-2105-6-212
This article is available from: /1471-2105/6/212
© 2005 Wegner and Kummer; licensee BioMed Central Ltd.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (/licenses/by/2.0),
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract
Background: To study complex biochemical reaction networks in living cells researchers more
and more rely on databases and computational methods. In order to facilitate computational
approaches, visualisation techniques are highly important. Biochemical reaction networks, e.g.
metabolic pathways are often depicted as graphs and these graphs should be drawn dynamically to
provide flexibility in the context of different data. Conventional layout algorithms are not sufficient
for every kind of pathway in biochemical research. This is ma
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