原创力文档- 1、原创力文档（book118）网站文档一经付费（服务费），不意味着购买了该文档的版权，仅供个人/单位学习、研究之用，不得用于商业用途，未经授权，严禁复制、发行、汇编、翻译或者网络传播等，侵权必究。。
- 2、本站所有内容均由合作方或网友上传，本站不对文档的完整性、权威性及其观点立场正确性做任何保证或承诺！文档内容仅供研究参考，付费前请自行鉴别。如您付费，意味着您自己接受本站规则且自行承担风险，本站不退款、不进行额外附加服务；查看《如何避免下载的几个坑》。如果您已付费下载过本站文档，您可以点击 这里二次下载。
- 3、如文档侵犯商业秘密、侵犯著作权、侵犯人身权等，请点击“版权申诉”（推荐），也可以打举报电话：400-050-0827(电话支持时间：9:00-18:30)。
- 4、该文档为VIP文档，如果想要下载，成为VIP会员后，下载免费。
- 5、成为VIP后，下载本文档将扣除1次下载权益。下载后，不支持退款、换文档。如有疑问请联系我们。
- 6、成为VIP后，您将拥有八大权益，权益包括：VIP文档下载权益、阅读免打扰、文档格式转换、高级专利检索、专属身份标志、高级客服、多端互通、版权登记。
- 7、VIP文档为合作方或网友上传，每下载1次， 网站将根据用户上传文档的质量评分、类型等，对文档贡献者给予高额补贴、流量扶持。如果你也想贡献VIP文档。上传文档
查看更多
a user-friendly web portal for t-coffee on supercomputers一个用户友好的门户网站t-coffee超级计算机
Rius et al. BMC Bioinformatics 2011, 12:150
/1471-2105/12/150
SOFTWARE Open Access
A user-friendly web portal for T-Coffee on
supercomputers
1* 1 1 2 2 3
Josep Rius , Fernando Cores , Francesc Solsona , Jano I van Hemert , Jos Koetsier and Cedric Notredame
Abstract
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence
alignment tool. It is based on MPI and RMA mechanisms. Its purpose is to reduce the execution time of the
large-scale sequence alignments. It can be run on distributed memory clusters allowing users to align data sets
consisting of hundreds of proteins within a reasonable time. However, most of the potential users of this tool are
not familiar with the use of grids or supercomputers.
Results: In this paper we show how PTC can be easily deployed and controlled on a super computer architecture
using a web portal developed using Rapid. Rapid is a tool for efficiently generating standardized portlets for a
wide range of applications and the approach described here is generic enough to be applied to other applications,
or to deploy PTC on different HPC environments.
Conclusions: The PTC portal allows users to upload a large number of sequences to be aligned by the parallel
version of TC that cannot be aligned by a single machine due to memory and execution time constraints. The
web portal provides a user-friendly solution.
Background based on terminals used over several decades. We
Nowadays, researchers in the field of genomics increas- address this issue by introducing a user-friendly portal
ingly require
您可能关注的文档
- a split and rearranged nuclear gene encoding the iron-sulfur subunit of mitochondrial succinate dehydrogenase in euglenozoa分裂和重新安排核基因编码iron-sulfur euglenozoa线粒体琥珀酸脱氢酶的亚基.pdf
- a stable aberrant immunophenotype characterizes nearly all cases of cutaneous t-cell lymphoma in blood and can be used to monitor response to therapy稳定异常immunophenotype描述几乎所有皮肤t细胞淋巴瘤的病例血液和可用于监测对治疗的反应.pdf
- a speedup technique for (l, d)-motif finding algorithms加速技术(l、d)主题发现算法.pdf
- a single mutation results in diploid gamete formation and parthenogenesis in a drosophila yemanuclein-alpha meiosis i defective mutant单一突变导致二倍体配子形成和果蝇yemanuclein-alpha减数分裂我缺陷突变株孤雌生殖.pdf
- a sry-hmg box frame shift mutation inherited from a mosaic father with a mild form of testicular dysgenesis syndrome in turner syndrome patientsry-hmg盒子帧转移突变马赛克从父亲那里继承的一种轻微的睾丸发育不全综合症特纳综合征患者.pdf
- a statistical framework for consolidating sibling probe sets for affymetrix genechip data统计框架整合兄弟探针集affymetrix genechip数据.pdf
- a statistical approach to selecting and confirming validation targets in -omics experiments统计方法选择和确认验证目标组学实验.pdf
- a statistical framework for differential network analysis from microarray data统计从微阵列数据微分网络分析框架.pdf
- a statistical assessment of differences and equivalences between genetically modified and reference plant varieties之间的差异和等价统计评估转基因植物品种和参考.pdf
- a statistical framework to evaluate virtual screening一个统计框架评估虚拟筛选.pdf
- a unique population of effector memory lymphocytes identified by cd146 having a distinct immunophenotypic and genomic profile一个独特的人口效应记忆淋巴细胞被cd146拥有独特的immunophenotypic和基因组概要文件.pdf
- a useful approach to total analysis of risc-associated rna一个有用的方法来分析risc-associated总rna.pdf
- a unified framework for managing provenance information in translational research一个统一的框架来管理出处信息转化研究.pdf
- a universal dna mini-barcode for biodiversity analysis一个普遍的dna mini-barcode生物多样性分析.pdf
- a validated stability-indicating hplc method for determination of varenicline in its bulk and tablets验证stability-indicating高效液相色谱方法测定伐伦克林散装和平板电脑.pdf
- a user-friendly matlab program and gui for the pseudorotation analysis of saturated five-membered ring systems based on scalar coupling constants一个用户友好的matlab程序和gui的假回转分析饱和五元环系统基于标量耦合常数.pdf
- a validation of the first genome-wide association study of calcaneus ultrasound parameters in the european male ageing study验证第一个全基因组关联研究跟骨超声参数在欧洲男性衰老的研究.pdf
- a universal scaling relationship between body mass and proximal limb bone dimensions in quadrupedal terrestrial tetrapods通用扩展身体质量和近端肢体骨维度之间的关系有四足的陆地四足动物.pdf
- a unified framework for finding differentially expressed genes from microarray experiments一个统一的框架中寻找差异表达基因微阵列实验.pdf
- a verification protocol for the probe sequences of affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat验证协议的探针序列affymetrix基因组阵列的研究揭示了探测精度高老鼠,人类和老鼠.pdf
文档评论（0）