原创力文档the impact of ty3-gypsy group ltr retrotransposons fatima on b-genome specificity of polyploid wheatsty3-gypsy集团ltr反转位子活动的影响法蒂玛b-genome特异性的多倍体小麦.pdfVIP
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the impact of ty3-gypsy group ltr retrotransposons fatima on b-genome specificity of polyploid wheatsty3-gypsy集团ltr反转位子活动的影响法蒂玛b-genome特异性的多倍体小麦
Salina et al. BMC Plant Biology 2011, 11:99
/1471-2229/11/99
RESEARCH ARTICLE Open Access
The impact of Ty3-gypsy group LTR
retrotransposons Fatima on B-genome specificity
of polyploid wheats
1* 1 1 1 2 2
Elena A Salina , Ekaterina M Sergeeva , Irina G Adonina , Andrey B Shcherban , Harry Belcram , Cecile Huneau
and Boulos Chalhoub2
Abstract
Background: Transposable elements (TEs) are a rapidly evolving fraction of the eukaryotic genomes and the main
contributors to genome plasticity and divergence. Recently, occupation of the A- and D-genomes of allopolyploid
wheat by specific TE families was demonstrated. Here, we investigated the impact of the well-represented family of
gypsy LTR-retrotransposons, Fatima, on B-genome divergence of allopolyploid wheat using the fluorescent in situ
hybridisation (FISH) method and phylogenetic analysis.
Results: FISH analysis of a BAC clone (BAC_2383A24) initially screened with Spelt1 repeats demonstrated its
predominant localisation to chromosomes of the B-genome and its putative diploid progenitor Aegilops speltoides
in hexaploid (genomic formula, BBAADD) and tetraploid (genomic formula, BBAA) wheats as well as their diploid
progenitors. Analysis of the complete BAC_2383A24 nucleotide sequence (113 605 bp) demonstrated that it
contains 55.6% TEs, 0.9% subtelomeric tandem repeats (Spelt1), and five genes. LTR retrotransposons are
predominant, representing 50.7% of the total nucleotide sequence. Three elements of the gypsy LTR
retrotransposon family Fatima make up 47.2% of all the LTR retrotransposons in this BAC. In situ hybridisation of
the Fatima_2383A24-3 subclone suggests that individual representatives of the Fatima family contribute to the
ma
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