高通量测序微生物多样性流程.pptVIP

Heuristic neighbor-joining Reducing the length of the tree: Nearest-neighbor interchanges Subtree-prune-regraft moves Distance model Maximizing the trees likelihood with NNIs Local support values How it Works FastTree has five stages: Unifrac UniFrac provides a suite of tools for the comparison of microbial communities using phylogenetic information. It takes as input a single phylogenetic tree that contains sequences derived from at least two different environmental samples and a file describing which sequences came from which sample. /unifrac/ Determine if the environments in the inpu