Co-Modelling and Conditional Modelling.pptVIP

* Make simpler. Show basic probability expressions. * * * * * * * * * All the stuff on statistical alignment - remove * * * * * Co-Modelling and Conditional Modelling Observable Observable Unobservable Unobservable Goldman, Thorne Jones, 96 U C G A C A U A C Knudsen.., 99 Eddy co. Meyer and Durbin 02 Pedersen …, 03 Siepel Haussler 03 Pedersen, Meyer, Forsberg…, Simmonds 2004a,b McCauley …. Firth Brown Conditional Modelling Needs: Footprinting -Signals (Blanchette) AGGTATATAATGCG..... Pcoding{ATG--GTG} or AGCCATTTAGTGCG..... Pnon-coding{ATG--GTG} Grammars: Finite Set of Rules for Gen