A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome 英文参考文献.docVIP
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A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome 英文参考文献
AGene-BasedLinkageMapforBicyclusanynana
ButterfliesAllowsforaComprehensiveAnalysisof
SyntenywiththeLepidopteranReferenceGenome
Patr?′ciaBeldade1,2*,SuzanneV.Saenko1,NicolienPul1,AnthonyD.Long3
1InstituteofBiology,LeidenUniversity,Leiden,TheNetherlands,2InstitutoGulbenkiandeCie?ncia,Oeiras,Portugal,3DepartmentofEcologyandEvolutionaryBiology,
UniversityofCaliforniaIrvine,Irvine,California,UnitedStatesofAmerica
Abstract
Lepidopterans (butterflies and moths) are a rich and diverse order of insects, which, despite their economic impact and
unusualbiologicalproperties,arerelativelyunderrepresentedintermsofgenomicresources.Thegenomeofthesilkworm
Bombyx mori has been fully sequenced, but comparative lepidopteran genomics has been hampered by the scarcity of
information for other species. This is especially striking for butterflies, even though they have diverse and derived
phenotypes (such as color vision and wing color patterns) and are considered prime models for the evolutionary and
developmental analysis of ecologically relevant, complex traits. We focus on Bicyclus anynana butterflies, a laboratory
system for studying the diversification of novelties and serially repeated traits. With a panel of 12 small families and a
biphasicmappingapproach,wefirstassigned508expressedgenestosegregationgroupsandthenordered297ofthem
within individual linkage groups. We also coarsely mapped seven color pattern loci. This is the richest gene-based map
availablefor anybutterflyspecies andallowedforabroad-coverage analysis ofsyntenywiththelepidopteranreference
genome.Basedon462pairsofmappedorthologousmarkersinBi.anynanaandBo.mori,weobservedstrongconservation
ofgeneassignmenttochromosomes,butalsoevidencefornumerouslarge-andsmall-scalechromosomalrearrangements.
Withgenecollectionsgrowingforavarietyoftargetorganisms,theabilitytoplacethosegenesintheirpropergenomic
contextisparamount.Methodstomapexpressedgenesandtocomparemapswithrelevantmodelsystemsarecrucialto
extendgenomic-levelanalysiso
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