Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus 英文参考文献.docVIP

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Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus 英文参考文献.doc

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Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus 英文参考文献

Genome-WideIdentificationandCharacterizationof R2R3MYBFamilyinCucumissativus QiangLi,CunjiaZhang,JingLi,LinaWang,ZhonghaiRen* StateKeyLaboratoryofCropBiology,KeyLaboratoryofBiologyandGeneticImprovementofHorticulturalCrops(HuanghuaiRegion),MinistryofAgriculture,Collegeof HorticultureScienceandEngineering,ShandongAgriculturalUniversity,Tai’an,People’sRepublicofChina Abstract Background: The R2R3MYB proteins comprise one of the largest families of transcription factors in plants. Although genome-wideanalysisofthisfamilyhasbeencarriedoutinsomespecies,littleisknownaboutR2R3MYBgenesincucumber (CucumissativusL.). PrincipalFindings:Thisstudyhasidentified55R2R3MYBgenesinthelatestcucumbergenomeandtheCsR2R3MYBfamily containedthesmallestnumberofidentifiedgenescomparedtootherspeciesthathavebeenstudiedduetotheabsenceof recentgeneduplicationevents.Theseresultswerealsosupportedbygenomedistributionandgeneduplicationanalysis. Phylogeneticanalysisshowedthattheycouldbeclassifiedinto11subgroups.Theevolutionaryrelationshipsandtheintron -exonorganizationsthatshowedsimilaritieswithArabidopsis,VitisandGlycineR2R3MYBproteinswerealsoanalyzedand suggestedstronggeneconservationbutalsotheexpansionsofparticularfunctionalgenesduringtheevolutionoftheplant species.Inaddition,wefoundthat8outof55(,14.54%)cucumberR2R3MYBgenesunderwentalternativesplicingevents, producing a variety of transcripts from a single gene, which illustrated the extremely high complexity of transcriptome regulation.Tissue-specificexpressionprofilesshowedthat50cucumberR2R3MYBgeneswereexpressedinatleastoneof the tissues and the other 5 genes showed very low expression in all tissues tested, which suggested that cucumber R2R3MYB genes took part in many cellular processes. The transcript abundance level analysis during abiotic conditions (NaCl, ABA and low temperature treatments) identified a group of R2R3MYB genes that responded to one or more treatments. Conclusions: This study has produced a comparative genomics analysis of the