Messina A Novel Analysis Tool to Identify Biologically Relevant Molecules in Disease 英文参考文献.docVIP
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Messina A Novel Analysis Tool to Identify Biologically Relevant Molecules in Disease 英文参考文献
Messina:ANovelAnalysisTooltoIdentifyBiologically
RelevantMoleculesinDisease
MarkPinese1*,ChristopherJ.Scarlett1,JamesG.Kench1,2,3,EmilyK.Colvin1,DavendraSegara1,4,
SusanM.Henshall1,RobertL.Sutherland1,AndrewV.Biankin1,4
1CancerResearchProgram,GarvanInstituteofMedicalResearch,Darlinghurst,NewSouthWales,Australia,2CentralClinicalSchool,UniversityofSydney,Camperdown,
New South Wales, Australia, 3Department of Anatomical Pathology, Royal Prince Alfred Hospital, Camperdown, New South Wales, Australia, 4Division of Surgery,
BankstownHospital,Bankstown,NewSouthWales,Australia
Abstract
Background: Morphologically similar cancers display heterogeneous patterns of molecular aberrations and follow
substantiallydifferentclinicalcourses.Thisdiversityhasbecomethebasisforthedefinitionofmolecularphenotypes,with
significant implications for therapy. Microarray or proteomic expression profiling is conventionally employed to identify
disease-associated genes, however, traditional approaches for the analysis of profiling experiments may miss molecular
aberrationswhichdefinebiologicallyrelevantsubtypes.
Methodology/PrincipalFindings:HerewepresentMessina,amethodthatcanidentifythosegenesthatonlysometimes
showaberrantexpressionincancer.WedemonstratewithsimulateddatathatMessinaishighlysensitiveandspecificwhen
used to identify genes which are aberrantly expressed in only a proportion of cancers, and compare Messina to
contemporaryanalysistechniques.WeillustrateMessinabyusingittodetecttheaberrantexpressionofagenethatmay
playanimportantroleinpancreaticcancer.
Conclusions/Significance:Messinaallowsthedetectionofgeneswithprofilestypicalofmarkersofmolecularsubtype,and
complementsexistingmethodstoassisttheidentificationofsuchmarkers.Messinaisapplicabletoanyglobalexpression
profilingdata,andtoallowitseasyapplicationhasbeenpackagedintoafreely-availablestand-alonesoftwarepackage.
Citation: Pinese M, Scarlett CJ, Kench JG, Colvin EK, Segara D, et al. (2009) Messina: A Novel Analysis Tool to Identif
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