Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells 英文参考文献.docVIP
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Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells 英文参考文献
NanoliterReactors
ImproveMultipleDisplacementAmplification
ofGenomesfromSingleCells
Yann Marcy1,2¤,Thomas Ishoey3,Roger S.Lasken3,Timothy B.Stockwell4,Brian P.Walenz4,Aaron L.Halpern4,
Karen Y.Beeson4,Susanne M.D.Goldberg5,Stephen R.Quake1,2*
1 Department of Bioengineering, Stanford University, Stanford, California, United States of America, 2 Howard Hughes Medical Institute, Stanford University, Stanford,
California,UnitedStatesofAmerica,3J.CraigVenterInstitute,LaJolla,California,UnitedStatesofAmerica,4J.CraigVenterInstitute,Rockville,Maryland,UnitedStatesof
America,5TheJointTechnologyCenter,J.CraigVenterInstitute,Rockville,Maryland,UnitedStatesofAmerica
Since only a small fraction of environmental bacteria are amenable to laboratory culture, there is great interest in
genomic sequencing directly from single cells. Sufficient DNA for sequencing can be obtained from one cell by the
MultipleDisplacementAmplification(MDA)method,therebyeliminatingtheneedtodevelopculturemethods.Here
weusedamicrofluidicdevicetoisolateindividualEscherichiacoliandamplifygenomicDNAbyMDAin60-nlreactions.
Our results confirm a report that reduced MDA reaction volume lowers nonspecific synthesis that can result from
contaminantDNAtemplatesandunfavourableinteractionbetweenprimers.Thequalityofthegenomeamplification
was assessed by qPCR and compared favourably to single-cell amplifications performed in standard 50-l l volumes.
Amplification bias was greatly reduced in nanoliter volumes, thereby providing a more even representation of all
sequences.Single-cellampliconsfrombothmicroliterandnanolitervolumesprovidedhigh-qualitysequencedataby
high-throughputpyrosequencing,therebydemonstratingastraightforwardroutetosequencinggenomesfromsingle
cells.
Citation:MarcyY,IshoeyT,LaskenRS,StockwellTB,WalenzBP,etal.(2007)Nanoliterreactorsimprovemultipledisplacementamplificationofgenomesfromsinglecells.
PLoSGenet3(9):e155.doi:10.1371/journal.pgen.0030155
lower volume on ampli?cation bias was not determin
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