Optimal compressed sensing reconstructions of fMRI using deterministic and stochastic sampling geometries 英文参考文献.docVIP

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Optimal compressed sensing reconstructions of fMRI using deterministic and stochastic sampling geometries 英文参考文献.doc

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Optimal compressed sensing reconstructions of fMRI using deterministic and stochastic sampling geometries 英文参考文献

Jerominetal.BioMedicalEngineeringOnLine2012,11:25 /content/11/1/25 RESEARCH OpenAccess Optimalcompressedsensingreconstructionsof fMRIusing2Ddeterministicandstochastic samplinggeometries OliverJeromin1,2,MariosSPattichis1*andVinceDCalhoun1,3 *Correspondence:pattichis@ece. 1DepartmentofElectricaland ComputerEngineering,Universityof NewMexico,Albuquerque,NM Abstract Background:Compressivesensingcanprovideapromisingframeworkfor acceleratingfMRIimageacquisitionbyallowingreconstructionsfromalimited 87131,USA Fulllistofauthorinformationis availableattheendofthearticle numberoffrequency-domainsamples.Unfortunately,themajorityofcompressive sensingstudiesarebasedonstochasticsamplinggeometriesthatcannotguarantee fastacquisitionsthatareneededforfMRI.Thepurposeofthisstudyistoprovidea comprehensiveoptimizationframeworkthatcanbeusedtodeterminetheoptimal 2Dstochasticordeterministicsamplinggeometry,aswellastoprovideoptimal reconstructionparametervaluesforguaranteeingimagequalityinthereconstructed images. Methods:Weinvestigatetheuseoffrequency-space(k-space)samplingbasedon: (i)2Ddeterministicgeometriesofdyadicphaseencoding(DPE)andspirallowpass (SLP)geometries,and(ii)2Dstochasticgeometriesbasedonrandomphase encoding(RPE)andrandomsamplesonaPDF(RSP).Overall,weconsiderover36 frequency-samplinggeometriesatdifferentsamplingrates.Foreachgeometry,we computeoptimalreconstructionsofsingleBOLDfMRIONOFFimages,aswellas BOLDfMRIactivitymapsbasedonthedifferencebetweentheONandOFFimages. Wealsoprovideanoptimizationframeworkfordeterminingtheoptimalparameters andsamplinggeometrypriortoscanning. Results:Foreachgeometry,weshowthatreconstructionparameteroptimization convergedafterjustafewiterations.Parameteroptimizationledtosignificantimage qualityimprovements.Foractivitydetection,retainingonly20.3%ofthesamples usingSLPgaveameanPSNRvalueof57.58dB.Wealsovalidatedthisresultwiththe useoftheStructuralSimilarityIndexMatrix(SSIM)imagequalitymetric.SSIMgavean excellentmeanvalueof0.9747(max=1).Thisindicatesthatex