Shortest-Path Network Analysis Is a Useful Approach toward Identifying Genetic Determinants of Longevity 英文参考文献.docVIP

Shortest-Path Network Analysis Is a Useful Approach toward Identifying Genetic Determinants of Longevity 英文参考文献.doc

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Shortest-Path Network Analysis Is a Useful Approach toward Identifying Genetic Determinants of Longevity 英文参考文献

Shortest-PathNetworkAnalysisIsaUsefulApproach towardIdentifyingGeneticDeterminantsofLongevity J.R.Managbanag1,TarynnM.Witten1*,DanailBonchev1,2,LindsayA.Fox3,MitsuhiroTsuchiya3,BrianK. Kennedy3,MattKaeberlein4* 1Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, United States of America, 2Department of Mathematics and AppliedMathematics,VirginiaCommonwealthUniversity,Richmond,Virginia,UnitedStatesofAmerica,3DepartmentofBiochemistry,UniversityofWashington,Seattle, Washington,UnitedStatesofAmerica,4DepartmentofPathology,UniversityofWashington,Seattle,Washington,UnitedStatesofAmerica Abstract Background:Identificationofgenesthatmodulatelongevityisamajorfocusofaging-relatedresearchandanareaofintense publicinterest.Inadditiontofacilitatinganimprovedunderstandingofthebasicmechanismsofaging,suchgenesrepresent potentialtargetsfortherapeuticinterventioninmultipleage-associateddiseases,includingcancer,heartdisease,diabetes,and neurodegenerativedisorders.Todate,however,targetedeffortsatidentifyinglongevity-associatedgeneshavebeenlimitedby alackofpredictivepower,andusefulalgorithmsforcandidategene-identificationhavealsobeenlacking. Methodology/PrincipalFindings:Wehaveutilizedashortest-pathnetworkanalysistoidentifynovelgenesthatmodulate longevityinSaccharomycescerevisiae.Basedonasetofpreviouslyreportedgenesassociatedwithincreasedlifespan,we applied a shortest-path network algorithm to a pre-existing protein–protein interaction dataset in order to construct a shortest-pathlongevitynetwork.Tovalidatethisnetwork,thereplicativeagingpotentialof88single-genedeletionstrains correspondingtopredictedcomponentsoftheshortest-pathlongevitynetworkwasdetermined.Herewereportthatthe single-gene deletion strains identified by our shortest-path longevity analysis are significantly enriched for mutations conferringeitherincreasedordecreasedreplicativelifespan,relativetoarandomlyselectedsetof564single-genedeletion strainsortothecurrentdatasetavail

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